GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000918-TA|BGIBMGA000918-PA|IPR001232|SKP1 component
         (162 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    25   0.88 
AJ304412-1|CAC39105.1|  196|Anopheles gambiae dynamin protein.         24   2.0  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          23   4.7  
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       22   8.2  
AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein ...    22   8.2  

>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 25.4 bits (53), Expect = 0.88
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 115 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAE 148
           LD+  +T  N  K K P E+ +  N   D+   +
Sbjct: 458 LDIDLRTSCNCEKNKKPMELSELCNFNGDYVCGQ 491


>AJ304412-1|CAC39105.1|  196|Anopheles gambiae dynamin protein.
          Length = 196

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 81 TDDISSWDADFLK 93
          TDD+ SW A FL+
Sbjct: 46 TDDVDSWKASFLR 58


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 131 PEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
           P+ ++K   +K +  AAE+D+  +E E  EE+
Sbjct: 950 PDGLQK--EVKKEVDAAEDDEEEEEEEQEEEE 979


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 1   MPNIKLQSSDNEVFVVDVE 19
           MP   ++  +N++ VVDVE
Sbjct: 350 MPGPAIEVCENDIIVVDVE 368


>AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein S17
           protein.
          Length = 131

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 72  EDDENKEKRTDDISSWDADFLKVDQGT 98
           E+ E ++    D+S+ + D ++VD  T
Sbjct: 76  EERERRDNYVPDVSALEQDIIEVDPET 102


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,607
Number of Sequences: 2123
Number of extensions: 5595
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 162
length of database: 516,269
effective HSP length: 59
effective length of query: 103
effective length of database: 391,012
effective search space: 40274236
effective search space used: 40274236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)