Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000918-TA|BGIBMGA000918-PA|IPR001232|SKP1 component
(162 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81084-6|CAB03110.1| 176|Caenorhabditis elegans Hypothetical pr... 215 1e-56
Z81072-14|CAB03027.1| 176|Caenorhabditis elegans Hypothetical p... 215 1e-56
AF440505-1|AAL34093.1| 170|Caenorhabditis elegans SKR-1 protein. 215 1e-56
Z81084-3|CAB03108.1| 174|Caenorhabditis elegans Hypothetical pr... 179 1e-45
AF440506-1|AAL34094.1| 174|Caenorhabditis elegans SKR-2 protein. 179 1e-45
Z83109-7|CAB05516.1| 167|Caenorhabditis elegans Hypothetical pr... 165 1e-41
AF440507-1|AAL34095.1| 167|Caenorhabditis elegans SKR-3 protein. 165 1e-41
AL117207-11|CAB60402.1| 159|Caenorhabditis elegans Hypothetical... 151 3e-37
Z92786-7|CAB07209.1| 145|Caenorhabditis elegans Hypothetical pr... 146 9e-36
AF440508-1|AAL34096.1| 144|Caenorhabditis elegans SKR-5 protein. 146 9e-36
AF440509-1|AAL34097.1| 194|Caenorhabditis elegans SKR-7 protein. 107 4e-24
AC024790-7|AAF60641.1| 194|Caenorhabditis elegans Skp1 related ... 107 4e-24
CU457737-6|CAM36327.1| 194|Caenorhabditis elegans Hypothetical ... 106 9e-24
AF440510-1|AAL34098.1| 194|Caenorhabditis elegans SKR-8 protein. 106 9e-24
AC006622-3|AAK77211.1| 194|Caenorhabditis elegans Skp1 related ... 106 9e-24
AL110479-12|CAB54358.1| 192|Caenorhabditis elegans Hypothetical... 105 2e-23
AF440512-1|AAL34100.1| 192|Caenorhabditis elegans SKR-10 protein. 105 2e-23
U60980-1|AAB17536.1| 172|Caenorhabditis elegans protein ( Caeno... 102 1e-22
CU457737-4|CAM36325.1| 194|Caenorhabditis elegans Hypothetical ... 102 1e-22
CU457737-3|CAM36324.1| 172|Caenorhabditis elegans Hypothetical ... 102 1e-22
AF440513-1|AAL34101.1| 172|Caenorhabditis elegans SKR-12 protein. 102 1e-22
AF440511-1|AAL34099.1| 194|Caenorhabditis elegans SKR-9 protein. 102 1e-22
AC006622-4|AAK77208.1| 172|Caenorhabditis elegans Skp1 related ... 102 1e-22
AC006622-2|AAK77209.1| 194|Caenorhabditis elegans Skp1 related ... 102 1e-22
Z93377-5|CAB07579.1| 195|Caenorhabditis elegans Hypothetical pr... 100 6e-22
AF440515-1|AAL34103.1| 174|Caenorhabditis elegans SKR-14 protein. 99 8e-22
AC024790-6|AAF60635.1| 197|Caenorhabditis elegans Skp1 related ... 99 8e-22
CU457737-5|CAM36326.1| 172|Caenorhabditis elegans Hypothetical ... 99 2e-21
AF440514-1|AAL34102.1| 172|Caenorhabditis elegans SKR-13 protein. 99 2e-21
AC006622-1|AAK77210.1| 172|Caenorhabditis elegans Skp1 related ... 99 2e-21
AL023837-2|CAB63347.1| 199|Caenorhabditis elegans Hypothetical ... 89 1e-18
U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related (u... 83 7e-17
AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein. 83 7e-17
Z50755-5|CAA90636.1| 173|Caenorhabditis elegans Hypothetical pr... 81 4e-16
AF440519-1|AAL34107.1| 173|Caenorhabditis elegans SKR-20 protein. 81 4e-16
AF440516-1|AAL34104.1| 184|Caenorhabditis elegans SKR-15 protein. 74 6e-14
AF099917-7|AAC68782.1| 184|Caenorhabditis elegans Skp1 related ... 74 6e-14
AF045646-12|AAL32222.1| 183|Caenorhabditis elegans Hypothetical... 71 4e-13
U41991-2|AAA83342.2| 181|Caenorhabditis elegans Skp1 related (u... 66 9e-12
Z50755-3|CAA90635.1| 182|Caenorhabditis elegans Hypothetical pr... 66 2e-11
AF440518-1|AAL34106.1| 155|Caenorhabditis elegans SKR-19 protein. 66 2e-11
Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical pr... 59 1e-09
AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein. 59 1e-09
AL032639-1|CAA21638.1| 373|Caenorhabditis elegans Hypothetical ... 36 0.011
Z68161-10|CAA92300.1| 347|Caenorhabditis elegans Hypothetical p... 28 2.8
Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical p... 28 2.8
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p... 28 2.8
Z93394-1|CAB07703.1| 369|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical pr... 27 6.5
AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical ... 27 6.5
AL117199-4|CAB55043.2| 608|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z81084-6|CAB03110.1| 176|Caenorhabditis elegans Hypothetical
protein F46A9.5 protein.
Length = 176
Score = 215 bits (526), Expect = 1e-56
Identities = 102/161 (63%), Positives = 119/161 (73%), Gaps = 3/161 (1%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXX---PLPNVNSAILKKVIQW 60
IK+ SSDNE+F+V + + S TI T P+ NV ++ILKKVI W
Sbjct: 16 IKISSSDNEIFLVPRNVIRLSNTINTLLMDLGLDDEEGTNAEPIPVQNVTASILKKVISW 75
Query: 61 ATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
+H DP ED +N+EKRTDDI SWD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 76 CNHHHSDPISTEDSDNREKRTDDIGSWDVEFLKVDQGTLFELILAANYLDIKGLLDVTCK 135
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
TVANMIKGK+PEEIR+TFNIKNDFT EE+Q+RKEN WCE+
Sbjct: 136 TVANMIKGKSPEEIRRTFNIKNDFTPEEEEQIRKENAWCED 176
>Z81072-14|CAB03027.1| 176|Caenorhabditis elegans Hypothetical
protein F46A9.5 protein.
Length = 176
Score = 215 bits (526), Expect = 1e-56
Identities = 102/161 (63%), Positives = 119/161 (73%), Gaps = 3/161 (1%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXX---PLPNVNSAILKKVIQW 60
IK+ SSDNE+F+V + + S TI T P+ NV ++ILKKVI W
Sbjct: 16 IKISSSDNEIFLVPRNVIRLSNTINTLLMDLGLDDEEGTNAEPIPVQNVTASILKKVISW 75
Query: 61 ATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
+H DP ED +N+EKRTDDI SWD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 76 CNHHHSDPISTEDSDNREKRTDDIGSWDVEFLKVDQGTLFELILAANYLDIKGLLDVTCK 135
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
TVANMIKGK+PEEIR+TFNIKNDFT EE+Q+RKEN WCE+
Sbjct: 136 TVANMIKGKSPEEIRRTFNIKNDFTPEEEEQIRKENAWCED 176
>AF440505-1|AAL34093.1| 170|Caenorhabditis elegans SKR-1 protein.
Length = 170
Score = 215 bits (526), Expect = 1e-56
Identities = 102/161 (63%), Positives = 119/161 (73%), Gaps = 3/161 (1%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXX---PLPNVNSAILKKVIQW 60
IK+ SSDNE+F+V + + S TI T P+ NV ++ILKKVI W
Sbjct: 10 IKISSSDNEIFLVPRNVIRLSNTINTLLMDLGLDDEEGTNAEPIPVQNVTASILKKVISW 69
Query: 61 ATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
+H DP ED +N+EKRTDDI SWD +FLKVDQGTLFELILAANYLDIKGLLDVTCK
Sbjct: 70 CNHHHSDPISTEDSDNREKRTDDIGSWDVEFLKVDQGTLFELILAANYLDIKGLLDVTCK 129
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
TVANMIKGK+PEEIR+TFNIKNDFT EE+Q+RKEN WCE+
Sbjct: 130 TVANMIKGKSPEEIRRTFNIKNDFTPEEEEQIRKENAWCED 170
>Z81084-3|CAB03108.1| 174|Caenorhabditis elegans Hypothetical
protein F46A9.4 protein.
Length = 174
Score = 179 bits (435), Expect = 1e-45
Identities = 88/162 (54%), Positives = 113/162 (69%), Gaps = 7/162 (4%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXX---PLPNVNSAILKKVIQW 60
IK+ SSD+E+F+V + + S T+ T P+ NV ++ILKKVI W
Sbjct: 16 IKISSSDDEIFLVPRNVIRLSNTLNTLLVDLGLDDDEGTNAEPIPVQNVTASILKKVINW 75
Query: 61 ATYHKDDPPLPEDDENKEKRTD-DISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTC 119
T H+ DP +P +D EK+TD I WD FL +DQGTLFELILAANYLDIKGLLDV C
Sbjct: 76 CTKHQSDP-IPTEDS--EKKTDGSIQDWDKKFLDIDQGTLFELILAANYLDIKGLLDVAC 132
Query: 120 KTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
++VANMIKGK+P+EIR+ FNIK+DFTA E +Q+RKEN WC++
Sbjct: 133 QSVANMIKGKSPDEIRRAFNIKDDFTAEEREQIRKENAWCDD 174
>AF440506-1|AAL34094.1| 174|Caenorhabditis elegans SKR-2 protein.
Length = 174
Score = 179 bits (435), Expect = 1e-45
Identities = 88/162 (54%), Positives = 113/162 (69%), Gaps = 7/162 (4%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXX---PLPNVNSAILKKVIQW 60
IK+ SSD+E+F+V + + S T+ T P+ NV ++ILKKVI W
Sbjct: 16 IKISSSDDEIFLVPRNVIRLSNTLNTLLVDLGLDDDEGTNAEPIPVQNVTASILKKVINW 75
Query: 61 ATYHKDDPPLPEDDENKEKRTD-DISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTC 119
T H+ DP +P +D EK+TD I WD FL +DQGTLFELILAANYLDIKGLLDV C
Sbjct: 76 CTKHQSDP-IPTEDS--EKKTDGSIQDWDKKFLDIDQGTLFELILAANYLDIKGLLDVAC 132
Query: 120 KTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
++VANMIKGK+P+EIR+ FNIK+DFTA E +Q+RKEN WC++
Sbjct: 133 QSVANMIKGKSPDEIRRAFNIKDDFTAEEREQIRKENAWCDD 174
>Z83109-7|CAB05516.1| 167|Caenorhabditis elegans Hypothetical
protein F44G3.6 protein.
Length = 167
Score = 165 bits (402), Expect = 1e-41
Identities = 84/161 (52%), Positives = 106/161 (65%), Gaps = 6/161 (3%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXX---XXXXXXXXXPLPNVNSAILKKVIQW 60
IKL SSD++ F V ++ S TI PL V S IL+K+I W
Sbjct: 10 IKLTSSDDKTFTVSRKVISQSKTITDIIQNLGIEESGSTSEDTIPLQKVTSTILEKIITW 69
Query: 61 ATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
+H DD P + DENK +T DIS WDA+F+KVDQGTLFE+ILAANYLDI+GLLDVT +
Sbjct: 70 CEHHADDEP-KKVDENK--KTVDISEWDAEFMKVDQGTLFEIILAANYLDIRGLLDVTTQ 126
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
VANM+KGKTP +IR FNI+NDF+ E + ++KEN WCE+
Sbjct: 127 NVANMMKGKTPSQIRTLFNIENDFSEEEREAMKKENAWCED 167
>AF440507-1|AAL34095.1| 167|Caenorhabditis elegans SKR-3 protein.
Length = 167
Score = 165 bits (402), Expect = 1e-41
Identities = 84/161 (52%), Positives = 106/161 (65%), Gaps = 6/161 (3%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXX---XXXXXXXXXPLPNVNSAILKKVIQW 60
IKL SSD++ F V ++ S TI PL V S IL+K+I W
Sbjct: 10 IKLTSSDDKTFTVSRKVISQSKTITDIIQNLGIEESGSTSEDTIPLQKVTSTILEKIITW 69
Query: 61 ATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
+H DD P + DENK +T DIS WDA+F+KVDQGTLFE+ILAANYLDI+GLLDVT +
Sbjct: 70 CEHHADDEP-KKVDENK--KTVDISEWDAEFMKVDQGTLFEIILAANYLDIRGLLDVTTQ 126
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
VANM+KGKTP +IR FNI+NDF+ E + ++KEN WCE+
Sbjct: 127 NVANMMKGKTPSQIRTLFNIENDFSEEEREAMKKENAWCED 167
>AL117207-11|CAB60402.1| 159|Caenorhabditis elegans Hypothetical
protein Y60A3A.18 protein.
Length = 159
Score = 151 bits (365), Expect = 3e-37
Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 10/159 (6%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
IKL SSD++ F V ++ S TI PLP V SAIL+K+I W +
Sbjct: 10 IKLISSDDKTFTVSRKVISQSKTIS--------GFTSEDTIPLPKVTSAILEKIITWCEH 61
Query: 64 HKDDPPLP-EDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
H DD P E E K+T +IS WDA+F+KVDQGTLFE+ILAANYLDI+GLL+VT + V
Sbjct: 62 HADDEPKKVEKIEKGNKKTVEISEWDAEFMKVDQGTLFEIILAANYLDIRGLLEVTTQNV 121
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
ANM+KGKTP ++R F I N F+ E + ++K N WCE+
Sbjct: 122 ANMMKGKTPSQVRTLFKIDN-FSEEELEAMKKGNAWCED 159
>Z92786-7|CAB07209.1| 145|Caenorhabditis elegans Hypothetical
protein F47H4.10 protein.
Length = 145
Score = 146 bits (353), Expect = 9e-36
Identities = 73/141 (51%), Positives = 94/141 (66%), Gaps = 6/141 (4%)
Query: 3 NIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWAT 62
++K+ +SD+ F+V +IA S + PL NV S I KKVI+W
Sbjct: 7 DVKIVTSDDVEFIVSPKIANQSKLL-----ADFVVLNQREPIPLKNVTSEIFKKVIEWCE 61
Query: 63 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
YH +D P P D+ +EKRTDDI WD +FLKVD+GTLFEL+LAA YLDIKGL +VTCK++
Sbjct: 62 YHAEDIPKPPDNV-EEKRTDDIGEWDVEFLKVDKGTLFELVLAATYLDIKGLFNVTCKSI 120
Query: 123 ANMIKGKTPEEIRKTFNIKND 143
AN IKGK+PEEIR FN+ N+
Sbjct: 121 ANSIKGKSPEEIRAVFNLGNE 141
>AF440508-1|AAL34096.1| 144|Caenorhabditis elegans SKR-5 protein.
Length = 144
Score = 146 bits (353), Expect = 9e-36
Identities = 73/141 (51%), Positives = 94/141 (66%), Gaps = 6/141 (4%)
Query: 3 NIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWAT 62
++K+ +SD+ F+V +IA S + PL NV S I KKVI+W
Sbjct: 6 DVKIVTSDDVEFIVSPKIANQSKLL-----ADFVVLNQREPIPLKNVTSEIFKKVIEWCE 60
Query: 63 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
YH +D P P D+ +EKRTDDI WD +FLKVD+GTLFEL+LAA YLDIKGL +VTCK++
Sbjct: 61 YHAEDIPKPPDNV-EEKRTDDIGEWDVEFLKVDKGTLFELVLAATYLDIKGLFNVTCKSI 119
Query: 123 ANMIKGKTPEEIRKTFNIKND 143
AN IKGK+PEEIR FN+ N+
Sbjct: 120 ANSIKGKSPEEIRAVFNLGNE 140
>AF440509-1|AAL34097.1| 194|Caenorhabditis elegans SKR-7 protein.
Length = 194
Score = 107 bits (257), Expect = 4e-24
Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++SSD +V+ + E K S T+ P+ NV I+K VI+W
Sbjct: 24 KVESSDGQVYEISDEAVKQSNTLSNLISTCVANDVASMDPIPITNVTGNIMKMVIEWCEK 83
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP +D++ K + WD +FLK+D LF+LI+A+N+LD+ GL+ CK VA
Sbjct: 84 HKGET-LPVEDDSVPKNIT-VPEWDTNFLKIDNDVLFDLIVASNFLDVPGLMSYACKMVA 141
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
NM GK+P+E+R F I D ++ KE E+K
Sbjct: 142 NMAIGKSPDEMRVLFAIPTDEEDEAAEKAAKEKAEAEKK 180
>AC024790-7|AAF60641.1| 194|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 7 protein.
Length = 194
Score = 107 bits (257), Expect = 4e-24
Identities = 57/159 (35%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++SSD +V+ + E K S T+ P+ NV I+K VI+W
Sbjct: 24 KVESSDGQVYEISDEAVKQSNTLSNLISTCVANDVASMDPIPITNVTGNIMKMVIEWCEK 83
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP +D++ K + WD +FLK+D LF+LI+A+N+LD+ GL+ CK VA
Sbjct: 84 HKGET-LPVEDDSVPKNIT-VPEWDTNFLKIDNDVLFDLIVASNFLDVPGLMSYACKMVA 141
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
NM GK+P+E+R F I D ++ KE E+K
Sbjct: 142 NMAIGKSPDEMRVLFAIPTDEEDEAAEKAAKEKAEAEKK 180
>CU457737-6|CAM36327.1| 194|Caenorhabditis elegans Hypothetical
protein C52D10.9 protein.
Length = 194
Score = 106 bits (254), Expect = 9e-24
Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++S+D +VF + E K S + P+ NV ILK VI+W
Sbjct: 24 KVESNDGKVFEISDEAVKQSNILSNLISTCAPEDVASMDPIPITNVTGNILKMVIEWCEK 83
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP +D++ K + + WD +FLK+D LF+LI+A NYLD+ GL++ CK VA
Sbjct: 84 HKGEA-LPVEDDSVPKNIN-VPEWDTNFLKIDNEVLFDLIVACNYLDVPGLMNYGCKMVA 141
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
NM GK+P+E+R F I D ++ KE E+K
Sbjct: 142 NMAIGKSPDELRIIFAIPTDEEDEAAERAAKEKAEAEKK 180
>AF440510-1|AAL34098.1| 194|Caenorhabditis elegans SKR-8 protein.
Length = 194
Score = 106 bits (254), Expect = 9e-24
Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++S+D +VF + E K S + P+ NV ILK VI+W
Sbjct: 24 KVESNDGKVFEISDEAVKQSNILSNLISTCAPEDVASMDPIPITNVTGNILKMVIEWCEK 83
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP +D++ K + + WD +FLK+D LF+LI+A NYLD+ GL++ CK VA
Sbjct: 84 HKGEA-LPVEDDSVPKNIN-VPEWDTNFLKIDNEVLFDLIVACNYLDVPGLMNYGCKMVA 141
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
NM GK+P+E+R F I D ++ KE E+K
Sbjct: 142 NMAIGKSPDELRIIFAIPTDEEDEAAERAAKEKAEAEKK 180
>AC006622-3|AAK77211.1| 194|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 8 protein.
Length = 194
Score = 106 bits (254), Expect = 9e-24
Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++S+D +VF + E K S + P+ NV ILK VI+W
Sbjct: 24 KVESNDGKVFEISDEAVKQSNILSNLISTCAPEDVASMDPIPITNVTGNILKMVIEWCEK 83
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP +D++ K + + WD +FLK+D LF+LI+A NYLD+ GL++ CK VA
Sbjct: 84 HKGEA-LPVEDDSVPKNIN-VPEWDTNFLKIDNEVLFDLIVACNYLDVPGLMNYGCKMVA 141
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
NM GK+P+E+R F I D ++ KE E+K
Sbjct: 142 NMAIGKSPDELRIIFAIPTDEEDEAAERAAKEKAEAEKK 180
>AL110479-12|CAB54358.1| 192|Caenorhabditis elegans Hypothetical
protein Y105C5B.13 protein.
Length = 192
Score = 105 bits (252), Expect = 2e-23
Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++S+D VF + E K S T+ P+ NV ILK VI+W
Sbjct: 22 KVESNDGTVFEISDEAVKQSNTLSNLISTCAPEDVASMDPIPITNVTGNILKMVIEWCEK 81
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP DD++ K + WD +FLK+D LF+LI+A NYLD+ GL++ CK VA
Sbjct: 82 HKGEA-LPVDDDSVPKHIT-VPEWDTNFLKIDNEVLFDLIVACNYLDVPGLMNYGCKMVA 139
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
M GK+P+E+R F I D ++ KE E+K
Sbjct: 140 MMAIGKSPDELRIIFAIPTDEEDEAAERAAKEKAEAEKK 178
>AF440512-1|AAL34100.1| 192|Caenorhabditis elegans SKR-10 protein.
Length = 192
Score = 105 bits (252), Expect = 2e-23
Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++S+D VF + E K S T+ P+ NV ILK VI+W
Sbjct: 22 KVESNDGTVFEISDEAVKQSNTLSNLISTCAPEDVASMDPIPITNVTGNILKMVIEWCEK 81
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP DD++ K + WD +FLK+D LF+LI+A NYLD+ GL++ CK VA
Sbjct: 82 HKGEA-LPVDDDSVPKHIT-VPEWDTNFLKIDNEVLFDLIVACNYLDVPGLMNYGCKMVA 139
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
M GK+P+E+R F I D ++ KE E+K
Sbjct: 140 MMAIGKSPDELRIIFAIPTDEEDEAAERAAKEKAEAEKK 178
>U60980-1|AAB17536.1| 172|Caenorhabditis elegans protein (
Caenorhabditis elegansSkp1p homolog mRNA, complete cds.
).
Length = 172
Score = 102 bits (245), Expect = 1e-22
Identities = 52/110 (47%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
P+ NVN + KV +W HK D +PED+ N K T I WD FLK++ LF+LIL
Sbjct: 59 PVTNVNGKTMAKVAEWCEKHKADA-IPEDNMNVLK-TLTIPEWDQKFLKIEDEALFDLIL 116
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRK 154
A+N+LDIKGL+ CKTV+NM KGKT E+R+ F I D A E+ ++
Sbjct: 117 ASNFLDIKGLMYFGCKTVSNMAKGKTTAELREIFGINTDEQDAAEETAQR 166
>CU457737-4|CAM36325.1| 194|Caenorhabditis elegans Hypothetical
protein C52D10.7 protein.
Length = 194
Score = 102 bits (245), Expect = 1e-22
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++S+D +VF + E K S + P+ NV ILK VI+W
Sbjct: 24 KVESNDGKVFEISDEAVKQSNILSNLISTCAPEDVASMDPIPITNVIGNILKMVIEWCEK 83
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP +D++ K + + WD +FLK+D LF+LI+A NYLD+ GL++ CK VA
Sbjct: 84 HKGEA-LPVEDDSVPKHVN-VPEWDTNFLKIDNDVLFDLIVACNYLDVPGLMNYGCKIVA 141
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
M GK+P+E+R F I D ++ KE E+K
Sbjct: 142 MMAIGKSPDELRIIFAIPTDEEDEAAERAAKEKAEAEKK 180
>CU457737-3|CAM36324.1| 172|Caenorhabditis elegans Hypothetical
protein C52D10.6 protein.
Length = 172
Score = 102 bits (245), Expect = 1e-22
Identities = 52/110 (47%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
P+ NVN + KV +W HK D +PED+ N K T I WD FLK++ LF+LIL
Sbjct: 59 PVTNVNGKTMAKVAEWCEKHKADA-IPEDNMNVLK-TLTIPEWDQKFLKIEDEALFDLIL 116
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRK 154
A+N+LDIKGL+ CKTV+NM KGKT E+R+ F I D A E+ ++
Sbjct: 117 ASNFLDIKGLMYFGCKTVSNMAKGKTTAELREIFGINTDEQDAAEETAQR 166
>AF440513-1|AAL34101.1| 172|Caenorhabditis elegans SKR-12 protein.
Length = 172
Score = 102 bits (245), Expect = 1e-22
Identities = 52/110 (47%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
P+ NVN + KV +W HK D +PED+ N K T I WD FLK++ LF+LIL
Sbjct: 59 PVTNVNGKTMAKVAEWCEKHKADA-IPEDNMNVLK-TLTIPEWDQKFLKIEDEALFDLIL 116
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRK 154
A+N+LDIKGL+ CKTV+NM KGKT E+R+ F I D A E+ ++
Sbjct: 117 ASNFLDIKGLMYFGCKTVSNMAKGKTTAELREIFGINTDEQDAAEETAQR 166
>AF440511-1|AAL34099.1| 194|Caenorhabditis elegans SKR-9 protein.
Length = 194
Score = 102 bits (245), Expect = 1e-22
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++S+D +VF + E K S + P+ NV ILK VI+W
Sbjct: 24 KVESNDGKVFEISDEAVKQSNILSNLISTCAPEDVASMDPIPITNVIGNILKMVIEWCEK 83
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP +D++ K + + WD +FLK+D LF+LI+A NYLD+ GL++ CK VA
Sbjct: 84 HKGEA-LPVEDDSVPKHVN-VPEWDTNFLKIDNDVLFDLIVACNYLDVPGLMNYGCKIVA 141
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
M GK+P+E+R F I D ++ KE E+K
Sbjct: 142 MMAIGKSPDELRIIFAIPTDEEDEAAERAAKEKAEAEKK 180
>AC006622-4|AAK77208.1| 172|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 12 protein.
Length = 172
Score = 102 bits (245), Expect = 1e-22
Identities = 52/110 (47%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
P+ NVN + KV +W HK D +PED+ N K T I WD FLK++ LF+LIL
Sbjct: 59 PVTNVNGKTMAKVAEWCEKHKADA-IPEDNMNVLK-TLTIPEWDQKFLKIEDEALFDLIL 116
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRK 154
A+N+LDIKGL+ CKTV+NM KGKT E+R+ F I D A E+ ++
Sbjct: 117 ASNFLDIKGLMYFGCKTVSNMAKGKTTAELREIFGINTDEQDAAEETAQR 166
>AC006622-2|AAK77209.1| 194|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 9 protein.
Length = 194
Score = 102 bits (245), Expect = 1e-22
Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 3/159 (1%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
K++S+D +VF + E K S + P+ NV ILK VI+W
Sbjct: 24 KVESNDGKVFEISDEAVKQSNILSNLISTCAPEDVASMDPIPITNVIGNILKMVIEWCEK 83
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
HK + LP +D++ K + + WD +FLK+D LF+LI+A NYLD+ GL++ CK VA
Sbjct: 84 HKGEA-LPVEDDSVPKHVN-VPEWDTNFLKIDNDVLFDLIVACNYLDVPGLMNYGCKIVA 141
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
M GK+P+E+R F I D ++ KE E+K
Sbjct: 142 MMAIGKSPDELRIIFAIPTDEEDEAAERAAKEKAEAEKK 180
>Z93377-5|CAB07579.1| 195|Caenorhabditis elegans Hypothetical
protein F13A7.9 protein.
Length = 195
Score = 100 bits (239), Expect = 6e-22
Identities = 57/151 (37%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Query: 5 KLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXX-XPLPNVNSAILKKVIQWATY 63
KL S D + F + + AK S+ + P+ V IL VI+W
Sbjct: 24 KLVSEDKQEFTISAKAAKKSIVLNDVISRRAPEDSAPMAPIPVEKVTGDILNMVIKWCEQ 83
Query: 64 HKDDPPLPEDDENKEKRTD--DISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 121
K+D LP DD + K+ D D+ WDADFLK+ LF+LI+A N LD+ GL++ CK
Sbjct: 84 RKEDE-LPVDDGSIPKKIDKIDVPQWDADFLKISSDVLFDLIVACNELDVPGLMNYGCKM 142
Query: 122 VANMIKGKTPEEIRKTFNI---KNDFTAAEE 149
VA+M GK+PE++R + I K D AAE+
Sbjct: 143 VADMAAGKSPEDMRTIYGIPTDKQDADAAEK 173
>AF440515-1|AAL34103.1| 174|Caenorhabditis elegans SKR-14 protein.
Length = 174
Score = 99 bits (238), Expect = 8e-22
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
P+ NVN ++KV +W H D +PED+ N K T I WD FLK++ LF+LIL
Sbjct: 65 PVTNVNGKTMEKVAEWCEKHNADA-IPEDNMNVLK-TLTIPEWDQKFLKIEDEALFDLIL 122
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEE 149
A+N+LDIKGL+ CKTV+NM KGKT E+R+ F I D A E
Sbjct: 123 ASNFLDIKGLMYYGCKTVSNMAKGKTTAELREIFGINTDEQDAAE 167
>AC024790-6|AAF60635.1| 197|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 14 protein.
Length = 197
Score = 99 bits (238), Expect = 8e-22
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
P+ NVN ++KV +W H D +PED+ N K T I WD FLK++ LF+LIL
Sbjct: 88 PVTNVNGKTMEKVAEWCEKHNADA-IPEDNMNVLK-TLTIPEWDQKFLKIEDEALFDLIL 145
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEE 149
A+N+LDIKGL+ CKTV+NM KGKT E+R+ F I D A E
Sbjct: 146 ASNFLDIKGLMYYGCKTVSNMAKGKTTAELREIFGINTDEQDAAE 190
>CU457737-5|CAM36326.1| 172|Caenorhabditis elegans Hypothetical
protein C52D10.8 protein.
Length = 172
Score = 98.7 bits (235), Expect = 2e-21
Identities = 52/110 (47%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
P+ NVN + KV + HK D +PED+ N K T I WD FLK++ LF+LIL
Sbjct: 59 PVTNVNGKTMAKVAELCEKHKADA-IPEDNMNVLK-TLTIPEWDQKFLKIEDEALFDLIL 116
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRK 154
A+N+LDIKGL+ CKTV+NM KGKT E+R+ F I D A E+ +K
Sbjct: 117 ASNFLDIKGLMYYGCKTVSNMAKGKTTAELREIFGINTDEQDAAEETAQK 166
>AF440514-1|AAL34102.1| 172|Caenorhabditis elegans SKR-13 protein.
Length = 172
Score = 98.7 bits (235), Expect = 2e-21
Identities = 52/110 (47%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
P+ NVN + KV + HK D +PED+ N K T I WD FLK++ LF+LIL
Sbjct: 59 PVTNVNGKTMAKVAELCEKHKADA-IPEDNMNVLK-TLTIPEWDQKFLKIEDEALFDLIL 116
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRK 154
A+N+LDIKGL+ CKTV+NM KGKT E+R+ F I D A E+ +K
Sbjct: 117 ASNFLDIKGLMYYGCKTVSNMAKGKTTAELREIFGINTDEQDAAEETAQK 166
>AC006622-1|AAK77210.1| 172|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 13 protein.
Length = 172
Score = 98.7 bits (235), Expect = 2e-21
Identities = 52/110 (47%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
P+ NVN + KV + HK D +PED+ N K T I WD FLK++ LF+LIL
Sbjct: 59 PVTNVNGKTMAKVAELCEKHKADA-IPEDNMNVLK-TLTIPEWDQKFLKIEDEALFDLIL 116
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRK 154
A+N+LDIKGL+ CKTV+NM KGKT E+R+ F I D A E+ +K
Sbjct: 117 ASNFLDIKGLMYYGCKTVSNMAKGKTTAELREIFGINTDEQDAAEETAQK 166
>AL023837-2|CAB63347.1| 199|Caenorhabditis elegans Hypothetical
protein Y37H2C.2 protein.
Length = 199
Score = 89.4 bits (212), Expect = 1e-18
Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 9/105 (8%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELIL 104
PL V++ I +K+I++ + PL +I WD++FLK+DQ TLF+L+L
Sbjct: 98 PLTKVDAKIFEKIIEYCEHQGTPRPL---------LNGEIGEWDSEFLKLDQNTLFDLVL 148
Query: 105 AANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEE 149
AANYL+I+ L DVT + +ANM+K TP +IR F + N ++AE+
Sbjct: 149 AANYLNIENLFDVTTQFIANMMKNNTPSQIRARFGVSNKHSSAED 193
>U39849-9|AAA81051.1| 180|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 17 protein.
Length = 180
Score = 83.4 bits (197), Expect = 7e-17
Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIK-TXXXXXXXXXXXXXXXPLP--NVNSAILKKVIQW 60
++L SSD + D+ S T+ T P+P NV LK +I+W
Sbjct: 25 LQLTSSDGHLLQGDIRALLLSSTLAATIRELGYDKEYCAELKPVPVNNVVGFTLKLLIEW 84
Query: 61 ATYHKDDPPLPEDDENKEKRTDDISSWDADFL-KVDQGTLFELILAANYLDIKGLLDVTC 119
HK+D P E K+K+ I SWD FL ++ LF+LI AA +LD+ GL++ C
Sbjct: 85 CDKHKEDDPAIALAE-KDKKNICIPSWDRHFLSRLPMSNLFDLITAAYHLDVTGLINYGC 143
Query: 120 KTVANMIKGKTPEEIRKTFNI 140
KTVAN KGK EE+R+ F I
Sbjct: 144 KTVANSAKGKNAEEMRELFGI 164
>AF440517-1|AAL34105.1| 180|Caenorhabditis elegans SKR-17 protein.
Length = 180
Score = 83.4 bits (197), Expect = 7e-17
Identities = 53/141 (37%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIK-TXXXXXXXXXXXXXXXPLP--NVNSAILKKVIQW 60
++L SSD + D+ S T+ T P+P NV LK +I+W
Sbjct: 25 LQLTSSDGHLLQGDIRALLLSSTLAATIRELGYDKEYCAELKPVPVNNVVGFTLKLLIEW 84
Query: 61 ATYHKDDPPLPEDDENKEKRTDDISSWDADFL-KVDQGTLFELILAANYLDIKGLLDVTC 119
HK+D P E K+K+ I SWD FL ++ LF+LI AA +LD+ GL++ C
Sbjct: 85 CDKHKEDDPAIALAE-KDKKNICIPSWDRHFLSRLPMSNLFDLITAAYHLDVTGLINYGC 143
Query: 120 KTVANMIKGKTPEEIRKTFNI 140
KTVAN KGK EE+R+ F I
Sbjct: 144 KTVANSAKGKNAEEMRELFGI 164
>Z50755-5|CAA90636.1| 173|Caenorhabditis elegans Hypothetical
protein R12H7.5 protein.
Length = 173
Score = 81.0 bits (191), Expect = 4e-16
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 2 PNIKLQSSDNEVFVVDVEIAK-CSVTIKTXXXXXXXXXXXXXXXP-LPNVNSAILKKVIQ 59
P KL+S D ++F V+ K C+ + P L +S+I++ VI+
Sbjct: 8 PLYKLKSEDGQIFNVERGPMKFCAFINQKFIDHGVNDRNCERADPILVPFHSSIVQAVIE 67
Query: 60 WATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTC 119
W YH D PL D + R D S WD F V+ G LF L+ A++ L ++ L+++ C
Sbjct: 68 WL-YHYQDNPLARRDS--KIRYHDFSEWDKQFFNVESGVLFALLNASHALGVEDLMNMGC 124
Query: 120 KTVANMIKGKTPEEIRKTFNIKNDFTAAEE 149
A +I+GK+ EEIRK + I++D EE
Sbjct: 125 AAAAELIRGKSTEEIRKIYGIRSDEEQMEE 154
>AF440519-1|AAL34107.1| 173|Caenorhabditis elegans SKR-20 protein.
Length = 173
Score = 81.0 bits (191), Expect = 4e-16
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 2 PNIKLQSSDNEVFVVDVEIAK-CSVTIKTXXXXXXXXXXXXXXXP-LPNVNSAILKKVIQ 59
P KL+S D ++F V+ K C+ + P L +S+I++ VI+
Sbjct: 8 PLYKLKSEDGQIFNVERGPMKFCAFINQKFIDHGVNDRNCERADPILVPFHSSIVQAVIE 67
Query: 60 WATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTC 119
W YH D PL D + R D S WD F V+ G LF L+ A++ L ++ L+++ C
Sbjct: 68 WL-YHYQDNPLARRDS--KIRYHDFSEWDKQFFNVESGVLFALLNASHALGVEDLMNMGC 124
Query: 120 KTVANMIKGKTPEEIRKTFNIKNDFTAAEE 149
A +I+GK+ EEIRK + I++D EE
Sbjct: 125 AAAAELIRGKSTEEIRKIYGIRSDEEQMEE 154
>AF440516-1|AAL34104.1| 184|Caenorhabditis elegans SKR-15 protein.
Length = 184
Score = 73.7 bits (173), Expect = 6e-14
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 6 LQSSDNEVFVVDVEIAKCSVTIK---TXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWAT 62
++S+D V + + K S T+ T P+ VN LK V++W
Sbjct: 23 IESNDRVVLKISEQAIKQSATLSNSITNLGYSAENAESMVPIPIEKVNGKTLKLVVEWCE 82
Query: 63 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
+HK DP +PE + + WD F+ ++ L +L+ A+N+L++ LL CK +
Sbjct: 83 HHKADP-VPEAYPSGNTV---LPVWDRKFVDIEHDALTDLVNASNFLEVMTLLTYCCKFI 138
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKE 155
A + KG +PEE+R F I D + ++ KE
Sbjct: 139 AGLAKGMSPEEMRVFFCIPTDEEDEKAERFGKE 171
>AF099917-7|AAC68782.1| 184|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 15 protein.
Length = 184
Score = 73.7 bits (173), Expect = 6e-14
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 7/153 (4%)
Query: 6 LQSSDNEVFVVDVEIAKCSVTIK---TXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWAT 62
++S+D V + + K S T+ T P+ VN LK V++W
Sbjct: 23 IESNDRVVLKISEQAIKQSATLSNSITNLGYSAENAESMVPIPIEKVNGKTLKLVVEWCE 82
Query: 63 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
+HK DP +PE + + WD F+ ++ L +L+ A+N+L++ LL CK +
Sbjct: 83 HHKADP-VPEAYPSGNTV---LPVWDRKFVDIEHDALTDLVNASNFLEVMTLLTYCCKFI 138
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKE 155
A + KG +PEE+R F I D + ++ KE
Sbjct: 139 AGLAKGMSPEEMRVFFCIPTDEEDEKAERFGKE 171
>AF045646-12|AAL32222.1| 183|Caenorhabditis elegans Hypothetical
protein F56B3.12 protein.
Length = 183
Score = 70.9 bits (166), Expect = 4e-13
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXX-XXXXPLP-NVNSAILKKVIQWA 61
++L SS+ EV D+ + S TI T P+P + + L +I+W
Sbjct: 29 LQLASSNGEVLQADIRALQLSSTISTTIKELGYDKEDCAEIKPIPVDEHEYTLDLLIKWC 88
Query: 62 TYHK-DDPPLPEDDENKEKRTDDISSWDADFLKV-DQGTLFELILAANYLDIKGLLDVTC 119
HK DDP + + ++ K+K I SWD F V G L +I AA LDI GL++
Sbjct: 89 DQHKGDDPEIAKAEKGKKKVV--IPSWDQHFFSVLPMGNLLAVIKAAYDLDITGLVNYGT 146
Query: 120 KTVANMIKGKTPEEIRKTFNI 140
+TVA+ I GK+ EE+R+ F +
Sbjct: 147 QTVASRINGKSAEEMREIFQL 167
>U41991-2|AAA83342.2| 181|Caenorhabditis elegans Skp1 related
(ubiquitin ligasecomplex component) protein 16 protein.
Length = 181
Score = 66.5 bits (155), Expect = 9e-12
Identities = 46/144 (31%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 6 LQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATYHK 65
L SSD E F D C K + V L +V++W H+
Sbjct: 34 LISSDGEKFQTD---GHCIRHSKVLMQASKSLETPDTPIQVEKVQGDTLNRVLEWCNNHR 90
Query: 66 DDPPLPEDDENKEKRTDDISSWDADFLK-VDQGTLFELILAANYLDIKGLLDVTCKTVAN 124
DD + + WD +LK +D L +LI A+N L ++ L+D CKTVAN
Sbjct: 91 DDGKYVSQCGPSLR----LPQWDFRWLKDLDNQELVDLINASNDLQMQQLMDYACKTVAN 146
Query: 125 MIKGKTPEEIRKTFNIKNDFTAAE 148
M KGK P ++R+ F I D AE
Sbjct: 147 MAKGKNPAQLRELFGILTDEEEAE 170
>Z50755-3|CAA90635.1| 182|Caenorhabditis elegans Hypothetical
protein R12H7.3 protein.
Length = 182
Score = 65.7 bits (153), Expect = 2e-11
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 49 VNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANY 108
+ + +++KVI+W +HK DPP E E T+DI WDA FL V LF++I AA
Sbjct: 57 IPATVMRKVIEWCDHHKHDPPYDES----EPETNDIPDWDASFLMVRHNMLFDIIRAARD 112
Query: 109 LDIKGLLDVTCKTVANMIKGKTPEEI 134
+ GL + C+ V G+ P EI
Sbjct: 113 FTVPGLFAMCCRVV-----GQNPREI 133
>AF440518-1|AAL34106.1| 155|Caenorhabditis elegans SKR-19 protein.
Length = 155
Score = 65.7 bits (153), Expect = 2e-11
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 49 VNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANY 108
+ + +++KVI+W +HK DPP E E T+DI WDA FL V LF++I AA
Sbjct: 57 IPATVMRKVIEWCDHHKHDPPYDES----EPETNDIPDWDASFLMVRHNMLFDIIRAARD 112
Query: 109 LDIKGLLDVTCKTVANMIKGKTPEEI 134
+ GL + C+ V G+ P EI
Sbjct: 113 FTVPGLFAMCCRVV-----GQNPREI 133
>Z70210-1|CAA94149.1| 176|Caenorhabditis elegans Hypothetical
protein K08H2.1 protein.
Length = 176
Score = 59.3 bits (137), Expect = 1e-09
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 2 PNIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLP-NVNSAILKKVIQW 60
P K+QS D +VF V+ + S K PL ++ S +L K+I+W
Sbjct: 8 PVFKIQSCDGQVFAVEDWFIQKS---KCFSVVLAQMNNLVQPHPLKTSICSFVLVKIIEW 64
Query: 61 ATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
+H+++ D++ +R +++WD F++ + L L AA L+I GLLDV C+
Sbjct: 65 CYHHRNE------DQDHAQRI--LTAWDVQFIRTNSAILLHLAEAAFRLEIVGLLDVACR 116
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTAAEED 150
V+ M+ G+T E++ + + ++E+
Sbjct: 117 AVSIML-GRTLNEVKLMLRVGGVESPSDEE 145
>AF440520-1|AAL34108.1| 172|Caenorhabditis elegans SKR-21 protein.
Length = 172
Score = 59.3 bits (137), Expect = 1e-09
Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 13/150 (8%)
Query: 2 PNIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLP-NVNSAILKKVIQW 60
P K+QS D +VF V+ + S K PL ++ S +L K+I+W
Sbjct: 4 PVFKIQSCDGQVFAVEDWFIQKS---KCFSVVLAQMNNLVQPHPLKTSICSFVLVKIIEW 60
Query: 61 ATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCK 120
+H+++ D++ +R +++WD F++ + L L AA L+I GLLDV C+
Sbjct: 61 CYHHRNE------DQDHAQRI--LTAWDVQFIRTNSAILLHLAEAAFRLEIVGLLDVACR 112
Query: 121 TVANMIKGKTPEEIRKTFNIKNDFTAAEED 150
V+ M+ G+T E++ + + ++E+
Sbjct: 113 AVSIML-GRTLNEVKLMLRVGGVESPSDEE 141
>AL032639-1|CAA21638.1| 373|Caenorhabditis elegans Hypothetical
protein F18A11.5 protein.
Length = 373
Score = 36.3 bits (80), Expect = 0.011
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLK-VDQGTLFELI 103
P+PNV +K V+ W H+ + P S+W+ D++K +D+ L + I
Sbjct: 270 PVPNVKGITMKMVVTWCIRHRVEVP-------------STSTWEVDYVKSLDREELKDAI 316
Query: 104 LAANYLDIKGLLDVT 118
AA YL + L+++T
Sbjct: 317 WAAKYLRMPILINIT 331
>Z68161-10|CAA92300.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 28.3 bits (60), Expect = 2.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 66 DDPPLPEDDENKEKRTDDISSWD 88
DD + +DD+NK ++D WD
Sbjct: 320 DDTMIDQDDDNKSTHSEDSDGWD 342
>Z68159-12|CAA92289.1| 347|Caenorhabditis elegans Hypothetical
protein F20C5.6 protein.
Length = 347
Score = 28.3 bits (60), Expect = 2.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 66 DDPPLPEDDENKEKRTDDISSWD 88
DD + +DD+NK ++D WD
Sbjct: 320 DDTMIDQDDDNKSTHSEDSDGWD 342
>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
protein 1 protein.
Length = 1845
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 78 EKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG 128
E+ D+ D + K G +FE + A YLD LD T + + +M++G
Sbjct: 1707 EEEIDEGQEEDIEVPKA-MGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRG 1756
>Z93394-1|CAB07703.1| 369|Caenorhabditis elegans Hypothetical
protein Y48E1C.2 protein.
Length = 369
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 66 DDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLD 110
D P+ + D N + + I + DFL+V + T F++I+ A ++D
Sbjct: 231 DKAPVSKKDPNHRRASFSICA--GDFLEVVKDTTFDVIVTAWFID 273
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 98 TLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENE 157
TL ++I+ N +D ++DVT + + E + K ++ FT EE++ +KE +
Sbjct: 285 TLRDMIIRTNLID---MIDVTRNVHYENFRFRQMEGLPKNEKNRDPFTHLEEERRQKEQD 341
Query: 158 WCEEK 162
E++
Sbjct: 342 LDEKR 346
>Z82075-5|CAD54162.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 27.1 bits (57), Expect = 6.5
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 46 LPNVNSAILKKVIQWA-TYHKDDPPLPED-DENKEKRTDDISSWDADFLKVDQGTLFELI 103
L ++ + I+K +++ + Y+ D +P+D DE E + + + V+ F+L+
Sbjct: 85 LSSLTNVIIKPLVKPSPVYNGADEWVPKDMDEIAEFPMESVDKYKKVHPNVEAPKKFKLV 144
Query: 104 LAANYLDIKGLLDVTCKTVANMIKGKTP-----EEIRKTFNIKNDFTAAEEDQVRKENEW 158
+ + L +T + A + + +P E+ R+ KN+ T E+ + +KE E
Sbjct: 145 -NGEFSVVASLETLTKEMNARVAEQSSPDHHKREDSREERLTKNELTDNEDPKKKKEKEA 203
Query: 159 CEEK 162
EE+
Sbjct: 204 KEEE 207
>AL021489-5|CAD54166.1| 1021|Caenorhabditis elegans Hypothetical
protein W07A8.2b protein.
Length = 1021
Score = 27.1 bits (57), Expect = 6.5
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 46 LPNVNSAILKKVIQWA-TYHKDDPPLPED-DENKEKRTDDISSWDADFLKVDQGTLFELI 103
L ++ + I+K +++ + Y+ D +P+D DE E + + + V+ F+L+
Sbjct: 85 LSSLTNVIIKPLVKPSPVYNGADEWVPKDMDEIAEFPMESVDKYKKVHPNVEAPKKFKLV 144
Query: 104 LAANYLDIKGLLDVTCKTVANMIKGKTP-----EEIRKTFNIKNDFTAAEEDQVRKENEW 158
+ + L +T + A + + +P E+ R+ KN+ T E+ + +KE E
Sbjct: 145 -NGEFSVVASLETLTKEMNARVAEQSSPDHHKREDSREERLTKNELTDNEDPKKKKEKEA 203
Query: 159 CEEK 162
EE+
Sbjct: 204 KEEE 207
>AL117199-4|CAB55043.2| 608|Caenorhabditis elegans Hypothetical
protein Y43F11A.5 protein.
Length = 608
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 68 PPLPEDDENKEKRTDDISSWDADFLK 93
PP P+ E++T +I+S D DFL+
Sbjct: 223 PPPPQKITTTEQKTAEITSADVDFLQ 248
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,109,128
Number of Sequences: 27539
Number of extensions: 163522
Number of successful extensions: 508
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 411
Number of HSP's gapped (non-prelim): 52
length of query: 162
length of database: 12,573,161
effective HSP length: 76
effective length of query: 86
effective length of database: 10,480,197
effective search space: 901296942
effective search space used: 901296942
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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