GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000918-TA|BGIBMGA000918-PA|IPR001232|SKP1 component
         (162 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   2.6  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.0  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)

Query: 82  DDISSWDADF 91
           DDIS WD DF
Sbjct: 669 DDISGWDNDF 678


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 131 PEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
           PE  R    I  D+TA++ D   +   W E+
Sbjct: 172 PEGARVPIEIPRDYTASDLDVEHRVAYWRED 202


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 50  NSAILKKVIQWATYHKDD 67
           NS    K+I+W T+ + D
Sbjct: 378 NSGATDKIIRWCTWSEGD 395


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 50  NSAILKKVIQWATYHKDD 67
           NS    K+I+W T+ + D
Sbjct: 378 NSGATDKIIRWCTWSEGD 395


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 50  NSAILKKVIQWATYHKDD 67
           NS    K+I+W T+ + D
Sbjct: 378 NSGATDKIIRWCTWSEGD 395


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 143 DFTAAEEDQVRKENEW 158
           D T  EED  R + +W
Sbjct: 491 DHTKREEDSTRVKEDW 506


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 54  LKKVIQWATYHKDDPPLPEDDENKEKRTDDIS 85
           LK    W T H  DP +     N E+    +S
Sbjct: 507 LKGHAHWLTLHFKDPKVESAFHNAEEAFSPLS 538


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENE 157
           N  K  TP++ RKT        ++ ++Q + E +
Sbjct: 784 NSTKETTPKKERKTATTTQPVISSRKEQKKSEEK 817


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,393
Number of Sequences: 429
Number of extensions: 1817
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 162
length of database: 140,377
effective HSP length: 53
effective length of query: 109
effective length of database: 117,640
effective search space: 12822760
effective search space used: 12822760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)