Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000918-TA|BGIBMGA000918-PA|IPR001232|SKP1 component
(162 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75950.1 68414.m08821 E3 ubiquitin ligase SCF complex subunit... 160 5e-40
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit... 159 6e-40
At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit... 142 8e-35
At1g20140.1 68414.m02519 E3 ubiquitin ligase SCF complex subunit... 141 2e-34
At4g34470.1 68417.m04901 E3 ubiquitin ligase SCF complex subunit... 140 3e-34
At2g25700.1 68415.m03080 E3 ubiquitin ligase SCF complex subunit... 133 6e-32
At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit... 128 1e-30
At3g25650.1 68416.m03192 Skp1 family protein similar toSkp1 [Med... 124 2e-29
At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit... 123 5e-29
At3g60010.1 68416.m06700 E3 ubiquitin ligase SCF complex subunit... 119 8e-28
At3g21860.1 68416.m02755 E3 ubiquitin ligase SCF complex subunit... 118 3e-27
At2g03170.1 68415.m00270 E3 ubiquitin ligase SCF complex subunit... 115 2e-26
At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit... 114 2e-26
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit... 109 7e-25
At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit... 106 6e-24
At3g21830.1 68416.m02752 E3 ubiquitin ligase SCF complex subunit... 99 2e-21
At2g20160.1 68415.m02357 E3 ubiquitin ligase SCF complex subunit... 87 4e-18
At2g45950.1 68415.m05713 SKP1 family protein similar to glycopro... 69 2e-12
At3g61415.1 68416.m06878 SKP1 family protein low similarity to S... 67 5e-12
At3g21840.1 68416.m02753 E3 ubiquitin ligase SCF complex subunit... 64 4e-11
At3g53060.1 68416.m05848 E3 ubiquitin ligase SCF complex subunit... 57 5e-09
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 30 0.66
At1g71360.1 68414.m08237 expressed protein low similarity to PIR... 29 1.1
At3g28760.1 68416.m03590 expressed protein contains Pfam PF01959... 29 2.0
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f... 28 3.5
At4g11000.1 68417.m01789 ankyrin repeat family protein contains ... 28 3.5
At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH) domain... 28 3.5
At5g59140.1 68418.m07412 SKP1 family protein similar to elongin ... 27 4.6
At1g55850.1 68414.m06405 cellulose synthase family protein simil... 27 4.6
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 27 6.1
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 27 8.1
At2g33050.1 68415.m04053 leucine-rich repeat family protein cont... 27 8.1
>At1g75950.1 68414.m08821 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At1) E3 ubiquitin ligase; skp1a; identical to
Skp1a GI:3068807, Skp1p GI:1432083 and UIP1 GI:3719209
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and PF03931:
Skp1 family, tetramerisation domain;
Length = 160
Score = 160 bits (388), Expect = 5e-40
Identities = 86/159 (54%), Positives = 104/159 (65%), Gaps = 5/159 (3%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L+SSD E F V+ +A S TI PLPNV S IL KVI++
Sbjct: 6 IVLKSSDGESFEVEEAVALESQTI----AHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61
Query: 64 HKDDPPLP-EDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
H + E E DD+ +WDADF+K+DQ TLFELILAANYL+IK LLD+TC+TV
Sbjct: 62 HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
A+MIKGKTPEEIR TFNIKNDFT EE++VR+EN+W E
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160
>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
from [Arabidopsis thaliana]; contains Pfam profiles
PF01466: Skp1 family, dimerisation domain and
PF03931:Skp1 family, tetramerisation domain; identical
to cDNA UFO binding protein UIP2 mRNA, partial cds
GI:3719210
Length = 171
Score = 159 bits (387), Expect = 6e-40
Identities = 87/169 (51%), Positives = 109/169 (64%), Gaps = 15/169 (8%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L+SSD E F +D +A S TIK PLPNV S IL KVI++
Sbjct: 7 ITLKSSDGENFEIDEAVALESQTIK----HMIEDDCTDNGIPLPNVTSKILSKVIEYCKR 62
Query: 64 HKDDPPLPEDDENKEKRT-----------DDISSWDADFLKVDQGTLFELILAANYLDIK 112
H + E + T +D+ +WD++F+KVDQGTLF+LILAANYL+IK
Sbjct: 63 HVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIK 122
Query: 113 GLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
GLLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT EE++VR+EN+W E
Sbjct: 123 GLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171
>At4g34210.1 68417.m04856 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At11), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 152
Score = 142 bits (345), Expect = 8e-35
Identities = 79/158 (50%), Positives = 99/158 (62%), Gaps = 11/158 (6%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L SSD + F V+ +A S TI PL NV S IL KVI++
Sbjct: 6 IVLMSSDGQSFEVEEAVAIQSQTI----AHMVEDDCVADGIPLANVESKILVKVIEYCKK 61
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
H D P +E D+++WD F+ ++Q T+FELILAANYL+IK LLD+TC+TVA
Sbjct: 62 HHVDEANPISEE-------DLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVA 114
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
+MIKGKTPEEIR TFNI+NDFT EE+ VRKEN+W E
Sbjct: 115 DMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152
>At1g20140.1 68414.m02519 E3 ubiquitin ligase SCF complex subunit,
putative similar to Skp1 GI:4959710 from [Medicago
sativa]
Length = 163
Score = 141 bits (341), Expect = 2e-34
Identities = 75/160 (46%), Positives = 101/160 (63%), Gaps = 6/160 (3%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L+SSD E F ++ +A S TIK PLPNV AIL KVI++
Sbjct: 8 IILKSSDGESFEIEEAVAVKSQTIK----HMIEDDCADNGIPLPNVTGAILAKVIEYCKK 63
Query: 64 HKDDPPLPEDDEN--KEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 121
H + D++ D++ +WD++F+KVDQ TLF+LILAANYL+I GLLD+TCK
Sbjct: 64 HVEAAAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKA 123
Query: 122 VANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
VA+ ++GKTPE++R FNIKND+T EE +VR EN+W E
Sbjct: 124 VADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163
>At4g34470.1 68417.m04901 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At12), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 152
Score = 140 bits (340), Expect = 3e-34
Identities = 81/160 (50%), Positives = 100/160 (62%), Gaps = 15/160 (9%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWAT- 62
I L SSD + F V+ +A S TI PL NV S IL KVI++
Sbjct: 6 IVLMSSDGQSFEVEEAVAIQSQTI----AHMVEDDCVADGIPLANVESKILVKVIEYCKK 61
Query: 63 YHKDDP-PLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 121
YH D+ P+ E+D NK WD F+ ++Q T+FELILAANYL+IK L D+TC+T
Sbjct: 62 YHVDEANPISEEDLNK---------WDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQT 112
Query: 122 VANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
VA+MIKGKTPEEIR TFNI+NDFT EE+ VRKEN+W E
Sbjct: 113 VADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152
>At2g25700.1 68415.m03080 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At3), putative E3 ubiquitin ligase; similar
to fimbriata-associated protein fap1 GI:2673868 from
[Antirrhinum majus]
Length = 163
Score = 133 bits (321), Expect = 6e-32
Identities = 73/160 (45%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L+SSD E F V+ +A S TIK PLPNV AIL KVI++
Sbjct: 8 IILKSSDGESFEVEEAVAVESQTIK----HMIEDDCVDNGIPLPNVTGAILAKVIEYCKK 63
Query: 64 HKDDPPLPEDDENKEKRTD--DISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKT 121
H + D++ T+ ++ +WD DF+KVD TLF+L+ AANYL+I GLLD+TCK
Sbjct: 64 HVEAAAEAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKA 123
Query: 122 VANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
VA+ ++GKTP ++R+ FNIKND+T EE +VR EN W E
Sbjct: 124 VADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163
>At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At18), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 [Arabidopsis thaliana]
Length = 183
Score = 128 bits (310), Expect = 1e-30
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 8/156 (5%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L SSD E F +D +A+ + I PL NV IL K+I++A
Sbjct: 31 ILLTSSDGESFEIDEAVARKFLII----VHMMEDNCAGEAIPLENVTGDILSKIIEYAKM 86
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFL-KVDQGTLFELILAANYLDIKGLLDVTCKTV 122
H ++P ++DE +K D SWDA F+ K+D T+F++ILAANYL+ +GLL +TV
Sbjct: 87 HVNEPSEEDEDEEAKKNLD---SWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTV 143
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 158
A+ IK KTPEE+R+ FNI+NDFT EE+++RKEN W
Sbjct: 144 ADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAW 179
>At3g25650.1 68416.m03192 Skp1 family protein similar toSkp1
[Medicago sativa] GI:4959710, fimbriata-associated
protein [Antirrhinum majus] GI:2673870, UIP2
[Arabidopsis thaliana] GI:3719211; contains Pfam profile
PF01466: Skp1 family, dimerisation domain
Length = 177
Score = 124 bits (300), Expect = 2e-29
Identities = 74/168 (44%), Positives = 104/168 (61%), Gaps = 16/168 (9%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L SSD E F V+ +A+ +K PL NV IL V+++
Sbjct: 6 IVLTSSDGESFQVEEVVARKLQIVK----HLLEDDCVINEIPLQNVTGNILSIVLEYCKK 61
Query: 64 HKDDPPLPEDD---ENKEKRTDD-----ISSWDADFLK-VDQGTLFELILAANYLDIKGL 114
H DD + +DD E K+K+ DD + +WDA+F+K +D T+F+LILAANYL+++GL
Sbjct: 62 HVDD--VVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGL 119
Query: 115 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQ-VRKENEWCEE 161
L +TC+TVA+ IK KTPEE+R+ FNI+NDFT EE++ +RKEN W E
Sbjct: 120 LGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167
>At3g21850.1 68416.m02754 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At9), putative E3 ubiquitin ligase; similar
to Skp1 homolog SKP1a GI:3068807 from [Arabidopsis
thaliana]
Length = 153
Score = 123 bits (297), Expect = 5e-29
Identities = 68/159 (42%), Positives = 90/159 (56%), Gaps = 12/159 (7%)
Query: 4 IKLQSSDNEVFVVDVEIAK-CSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWAT 62
I L+SSD F V+ E A+ C + I PLPNV IL VI++
Sbjct: 6 IILKSSDGHSFEVEEEAARQCQIII----AHMSENDCTDNGIPLPNVTGKILAMVIEYCN 61
Query: 63 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
H D P D DD+ WD +F++ D T+F+LI AANYL+IK L D+ C+TV
Sbjct: 62 KHHVDAANPCSD-------DDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTV 114
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
A +IKG TPE+IR+ FNI+ND T EE +R+EN+W E
Sbjct: 115 AEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153
>At3g60010.1 68416.m06700 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At13), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 154
Score = 119 bits (287), Expect = 8e-28
Identities = 67/160 (41%), Positives = 91/160 (56%), Gaps = 12/160 (7%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
+ L SSD E F V+ +A S TI P+ NV IL KVI++
Sbjct: 5 VMLLSSDGESFQVEEAVAVQSQTI----AHMIEDDCVANGVPIANVTGVILSKVIEYCKK 60
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKV--DQGTLFELILAANYLDIKGLLDVTCKT 121
H D E+ D++ WDA+F+K TLF+++LAANYL+IK LLD+ C+T
Sbjct: 61 HV------VSDSPTEESKDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQT 114
Query: 122 VANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
VA+MI GK P+EIR I+NDFT EE+++RKEN+W E
Sbjct: 115 VADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154
>At3g21860.1 68416.m02755 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At10), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 152
Score = 118 bits (283), Expect = 3e-27
Identities = 67/155 (43%), Positives = 88/155 (56%), Gaps = 11/155 (7%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L+SSD F V+ E A TI PLP V IL+ VI++
Sbjct: 6 IILKSSDGHSFEVEEEAACQCQTI----AHMSEDDCTDNGIPLPEVTGKILEMVIEYCNK 61
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
H D P DE D+ WD +F++ Q T+F+LI+AANYL+IK LLD+ C+TVA
Sbjct: 62 HHVDAANPCSDE-------DLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVA 114
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 158
+MIK T E RK FNI+ND+T EE+ VR+EN+W
Sbjct: 115 DMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQW 149
>At2g03170.1 68415.m00270 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At14), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 149
Score = 115 bits (276), Expect = 2e-26
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 16/159 (10%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L SSD E F V+ +A+ ++ PL NV IL V+++
Sbjct: 6 IVLSSSDGESFEVEEAVARKLKIVE----HMIEDDCVVTEVPLQNVTGKILSIVVEYCKK 61
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLK-VDQGTLFELILAANYLDIKGLLDVTCKTV 122
H D + +D+ +WD +F+K DQ T+F+L+LAANYL+IKGLLD++ +TV
Sbjct: 62 HVVD-----------EESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTV 110
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
A+ IK KTPEEIR+ FNI+NDFT EE VRKEN W E
Sbjct: 111 ADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149
>At3g60020.1 68416.m06702 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At5), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 153
Score = 114 bits (275), Expect = 2e-26
Identities = 67/161 (41%), Positives = 95/161 (59%), Gaps = 21/161 (13%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L+SSD + F +D ++A+ S+ I PL NV S ILK VI +
Sbjct: 5 IMLKSSDGKSFEIDEDVARKSIAIN----HMVEDGCATDVIPLRNVTSKILKIVIDYCEK 60
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGT-LFELILAANYLDIKGLLDVTCKTV 122
H K K +D+ WDADF+K + T LF++++AANYL+I+ LLD+TCKTV
Sbjct: 61 HV-----------KSKEEEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTV 109
Query: 123 -----ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 158
A+++ GKTP+EIR FNI+ND TA E ++R+EN+W
Sbjct: 110 SDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQW 150
>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 170
Score = 109 bits (263), Expect = 7e-25
Identities = 66/166 (39%), Positives = 94/166 (56%), Gaps = 12/166 (7%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L SSD+E F V+ +A+ I PL NV IL VI++
Sbjct: 6 IVLTSSDDESFEVEEAVARKLKVI----AHMIDDDCADKAIPLENVTGNILALVIEYCKK 61
Query: 64 HKDDPPLPEDD------EN-KEKRTDDISSWDADFLK-VDQGTLFELILAANYLDIKGLL 115
H D DD EN E+ +++ +WDA+F+K D T+ +LILA NYL+++ LL
Sbjct: 62 HVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLL 121
Query: 116 DVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
+TC+TVA+ +K +PEE+R+ FNI+ND+T EED +RKEN W E
Sbjct: 122 GLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE 167
>At2g03160.1 68415.m00269 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At19), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 200
Score = 106 bits (255), Expect = 6e-24
Identities = 50/111 (45%), Positives = 74/111 (66%), Gaps = 4/111 (3%)
Query: 56 KVIQWATYHKDDPPLPED---DENKEKRTDDISSWDADFLK-VDQGTLFELILAANYLDI 111
K ++ A DD +PE D+ E + + ++ WDA F+K D T+F++ILAANYL++
Sbjct: 81 KTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNV 140
Query: 112 KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
+GL D+ KT+A+ IK TPEE+R+ FNI+NDFT EE+ +R EN W E+
Sbjct: 141 QGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFEQ 191
>At3g21830.1 68416.m02752 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At8), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 152
Score = 98.7 bits (235), Expect = 2e-21
Identities = 57/158 (36%), Positives = 86/158 (54%), Gaps = 11/158 (6%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L+SS+ + F ++ E A+ TI + S IL+ VI++
Sbjct: 6 IMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVL----KMTSEILEMVIEYCNK 61
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
H D P D DD+ WD +F++ D+ T+F L AAN+L+ K LL + +TVA
Sbjct: 62 HHVDAANPCSD-------DDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVA 114
Query: 124 NMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 161
+MIKG TP+++R+ FNI+ND T EE +R+EN+W E
Sbjct: 115 DMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152
>At2g20160.1 68415.m02357 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At17), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1b GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 150
Score = 87.4 bits (207), Expect = 4e-18
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 15/156 (9%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L SSD+E F +D +A+ + L NV IL +I++
Sbjct: 6 IVLTSSDDECFEIDEAVARKMQMV----AHMIDDDCADKAIRLQNVTGKILAIIIEYCKK 61
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLK-VDQGTLFELILAANYLDIKGLLDVTCKTV 122
H DD + ++ +WDA+F+K +D TLF+L+ AA+YL + GL ++ + +
Sbjct: 62 HVDDV----------EAKNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAI 111
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 158
A+ KT EIR+ FNI+ND+T EE+++RK+NEW
Sbjct: 112 ADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEW 147
>At2g45950.1 68415.m05713 SKP1 family protein similar to
glycoprotein FP21 SP:P52285 from [Dictyostelium
discoideum]; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 342
Score = 68.5 bits (160), Expect = 2e-12
Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPN-VNSAILKKVIQWAT 62
I LQ++D + V+ E+A I LP VN A+ ++ +
Sbjct: 18 IWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHAISLPQRVNPAMFSLILDYCR 77
Query: 63 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
+H+ LP NKE++T +D F+++D L EL AA+ L +K L+D+T + +
Sbjct: 78 FHQ----LP-GRSNKERKT-----YDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRAL 127
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEE 149
A +I+GK PEEIR+ F++ +D T E+
Sbjct: 128 ARIIEGKNPEEIREIFHLPDDLTEEEK 154
>At3g61415.1 68416.m06878 SKP1 family protein low similarity to
SP|P52285 Glycoprotein FP21 precursor {Dictyostelium
discoideum}; contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 351
Score = 67.3 bits (157), Expect = 5e-12
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPN-VNSAILKKVIQWAT 62
I L+++D + V+ E+A I LP VN A+L + +
Sbjct: 18 IWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLIFDYCR 77
Query: 63 YHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTV 122
+H+ +P NKE++ +D F+++D L EL AA+ L +K L+D+T + +
Sbjct: 78 FHQ----VP-GRSNKERKV-----YDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRAL 127
Query: 123 ANMIKGKTPEEIRKTFNIKNDFTAAEE 149
A +I+GKTPEEIR+ F++ +D T E+
Sbjct: 128 ARIIEGKTPEEIREIFHLPDDLTEEEK 154
>At3g21840.1 68416.m02753 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At7), putative E3 ubiquitin ligase; similar
to Skp1 homolog GI:3068809, UIP2 GI:3719211 from
[Arabidopsis thaliana]
Length = 125
Score = 64.1 bits (149), Expect = 4e-11
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 63
I L+SSD ++F ++ E A+ TI P+ NV S IL+ VI++
Sbjct: 6 IMLKSSDGKMFEIEEETARQCQTI----AHMIEAECTDNVIPVSNVTSEILEMVIEYCNK 61
Query: 64 HKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVA 123
H D P DE D+ WD +F++ DQ T+F L+ AA L IK LL + +TVA
Sbjct: 62 HHVDAANPCSDE-------DLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVA 114
Query: 124 NMI 126
+M+
Sbjct: 115 DMV 117
>At3g53060.1 68416.m05848 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At6), putative E3 ubiquitin ligase; similar
to Skp1 GI:4959710 from [Medicago sativa]
Length = 85
Score = 57.2 bits (132), Expect = 5e-09
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 12/75 (16%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLK-VDQGTLFELI 103
PLPNV S IL VI++ H E+KE +D+ WDA+F+K ++Q LF+++
Sbjct: 17 PLPNVTSKILLLVIEYCKKHVV--------ESKE---EDLKKWDAEFMKKMEQSILFDVM 65
Query: 104 LAANYLDIKGLLDVT 118
+AANYL+I+ LLD+T
Sbjct: 66 MAANYLNIQSLLDLT 80
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 30.3 bits (65), Expect = 0.66
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 66 DDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANM 125
DD EDD + DD ++ D D G+L + + + + L+ T +
Sbjct: 493 DDGDNVEDDTAIDSMCDDTANDDVG--SDDSGSLADTVSDTSVEAVP--LEFVANTEGDS 548
Query: 126 IKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 162
+ GK+ + K N+ D A +E V KEN EE+
Sbjct: 549 VDGKS--NVEKHENVAEDLNAEKESLVVKENVVDEEE 583
>At1g71360.1 68414.m08237 expressed protein low similarity to
PIR|JC7185 chromosome 1 C1orf9 protein [Homo sapiens]
Length = 459
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 111 IKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENE 157
++ L+ + K + + +G T ++ +KT K F + E+ +KE E
Sbjct: 211 LEDLISIQDKNILKLQEGDTEQKEKKTMQAKESFESDEDKSKQKEKE 257
>At3g28760.1 68416.m03590 expressed protein contains Pfam PF01959:
predicted 3-dehydroquinate synthase
Length = 422
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 108 YLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKND 143
+++ K ++D T VA++ + TPEE+R + NI+N+
Sbjct: 117 FIEEKKVIDGTGNVVASVFEVSTPEELR-SLNIENE 151
>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 16 (UBP16)
[Arabidopsis thaliana] GI:11993477; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 731
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 56 KVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVD---QGTLFE 101
+++ W HK++ P+ DE KE+ S +DA VD +GT +E
Sbjct: 82 QILHWRRGHKEECRSPDYDEEKEEYVQ--SDYDAKESNVDFPSRGTAYE 128
>At4g11000.1 68417.m01789 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 406
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 90 DFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKT 137
D+ D T+F + N ++ LL T K A + GKT +I +T
Sbjct: 139 DWKDEDGNTVFHIAALINQTEVMKLLRKTVKVKAKNLDGKTAMDILQT 186
>At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
Length = 653
Score = 27.9 bits (59), Expect = 3.5
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 45 PLPNVNSAILKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKV-DQGTLFELI 103
P P++N +K + Y PP PE K + T+D+ + D + DQG F L
Sbjct: 400 PEPDMNE--IKALPPPENYTPPPPPEPEPQPEKPQFTEDLVNLREDEVTADDQGNKFALA 457
Query: 104 LAA 106
L A
Sbjct: 458 LFA 460
>At5g59140.1 68418.m07412 SKP1 family protein similar to elongin
C, Drosophila melanogaster, GI:2780365 PIR:JC5794;
contains Pfam profile PF01466: Skp1 family,
dimerisation domain
Length = 96
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 4 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXX-XXXXXXXXXXXPLPNVNSAILKKVIQW 60
+KL S + FV+D E A S TI++ P++++ IL+K+ Q+
Sbjct: 5 VKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQY 62
>At1g55850.1 68414.m06405 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-5 [gi:9622882]
from Zea mays
Length = 729
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 74 DENKEKRTDDISSWDADFLKVDQGTLFELIL 104
+E + K D S WDAD + + GT+ ++++
Sbjct: 226 EEARVKYGDGFSQWDADATRRNHGTILQVLV 256
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 116 DVTCKT--VANMIKGKTPEEIRKTFN 139
DVTC T VAN+ + T EE++K F+
Sbjct: 233 DVTCTTISVANLDQNVTEEELKKAFS 258
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 26.6 bits (56), Expect = 8.1
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 54 LKKVIQWATYHKDDPPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKG 113
LK + + + + +P ++E KE DD WD + + G +L+ NY
Sbjct: 222 LKDYLVKQLWKEKEERVPGEEELKELSEDDHEVWDQE--DFEAGRPLDLL---NYRHEDE 276
Query: 114 LLDVTCKTVANMIKG--KTPEEIRKTFNIKNDFTAAEEDQVRKE 155
T + +++G + + RK D +ED VRKE
Sbjct: 277 NAGDTVMGQSRVVEGSVRKKDNARKAQRKNKDERMKKEDDVRKE 320
>At2g33050.1 68415.m04053 leucine-rich repeat family protein
contains leucine rich-repeat domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
esculentum] gi|3894387|gb|AAC78593
Length = 800
Score = 26.6 bits (56), Expect = 8.1
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 74 DENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEE 133
+E++E+ D++ W A F G L L++A K V + KGK +
Sbjct: 719 EEDEEEEEDEVIEWKAVFFGYWPGLLLGLVMAHVIASFKPKWFV---KILGPAKGKQVDP 775
Query: 134 IRKTFNIKNDFTA-AEEDQVRKE 155
+R N+ + + + +D V +E
Sbjct: 776 VRLFMNLDSRWDSFNNKDTVEEE 798
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,887,988
Number of Sequences: 28952
Number of extensions: 154567
Number of successful extensions: 407
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 33
length of query: 162
length of database: 12,070,560
effective HSP length: 76
effective length of query: 86
effective length of database: 9,870,208
effective search space: 848837888
effective search space used: 848837888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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