Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000917-TA|BGIBMGA000917-PA|undefined
         (147 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31900.1 68417.m04533 chromatin remodeling factor, putative s...    29   0.96 
At5g13080.1 68418.m01499 WRKY family transcription factor WRKY D...    29   1.3  
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-...    29   1.3  
At3g01970.1 68416.m00153 WRKY family transcription factor simila...    28   2.2  
At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein si...    28   2.9  
At1g09050.1 68414.m01009 expressed protein                             28   2.9  
At3g53370.1 68416.m05890 DNA-binding S1FA family protein contain...    27   5.1  
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d...    27   6.8  
At4g16660.1 68417.m02517 heat shock protein 70, putative / HSP70...    27   6.8  
At3g17760.1 68416.m02266 glutamate decarboxylase, putative simil...    27   6.8  
At1g19490.1 68414.m02428 bZIP transcription factor family protei...    27   6.8  

>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
           strong similarity to chromatin remodeling factor CHD3
           (PICKLE) [Arabidopsis thaliana] GI:6478518; contains
           Pfam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain
          Length = 1202

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 29  QIKHDWQQDRIPPAKRKRVETD-SPQTEKVKKKPNTTTYAITTKNQ 73
           ++K D  +D++PP K   +  D S Q ++V K   T  Y + TK +
Sbjct: 436 RLKKDVLKDKVPPKKELILRVDMSSQQKEVYKAVITNNYQVLTKKR 481


>At5g13080.1 68418.m01499 WRKY family transcription factor WRKY
          DNA binding protein - Solanum tuberosum, EMBL:AJ278507
          Length = 145

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 42 AKRKRVETDSPQTEKVKKKPNTTTYAITTKNQFDILD 78
          + + R E  S   E  KKK     YA  T++Q DILD
Sbjct: 31 SSKVRSEGCSKSVESSKKKGKKQRYAFQTRSQVDILD 67


>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
            factor-related similar to CCAAT-box-binding transcription
            factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
            [Homo sapiens], GB:P53569 [Mus musculus]
          Length = 1056

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 24   FSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKK 60
            F++ ++ KH   QD    +K KR  T  P  +K KKK
Sbjct: 1015 FASLEEYKHLIDQDEKEDSKTKRKATSEPTKKKKKKK 1051


>At3g01970.1 68416.m00153 WRKY family transcription factor similar
          to WRKY1 GB:AAC49527 [Petroselinum crispum]
          Length = 147

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 50 DSPQTEKVKKKPNTTTYAITTKNQFDILD 78
          + P+++K KKK     YA  T++Q DILD
Sbjct: 38 EKPRSKK-KKKEREARYAFQTRSQVDILD 65


>At4g38590.1 68417.m05462 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile PF01301
           : Glycosyl hydrolases family 35
          Length = 988

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 16  DINVPEIIFSTKDQIKHDWQQDRIPPAKRKRV-------ETDSPQTEKVKKKPNTTTYAI 68
           D   PEI+ +   Q+K + ++ +    K+K         + D  + E+ + K N  T  +
Sbjct: 751 DKGCPEIVKTLAVQVKCEKKEGKQDEKKKKEDKDEEEEDDEDDDEEEEEEDKENKDTKDM 810

Query: 69  TTKNQFDILDSEES 82
             KNQ DILDS+ +
Sbjct: 811 ENKNQ-DILDSDSA 823


>At1g09050.1 68414.m01009 expressed protein
          Length = 916

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 45  KRVETDSPQTEKVKKKPNTTTYAITTKNQFDILDSEESTT 84
           ++++TD P+ +  +K+P TT      ++ F I    +STT
Sbjct: 779 QQIKTDGPRRQSTRKRPLTTRALEALESDFLITKRMKSTT 818


>At3g53370.1 68416.m05890 DNA-binding S1FA family protein contains
          Pfam profile: PF04689 DNA binding protein S1FA
          Length = 76

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 20 PEIIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKK 59
          P ++F   + + + + Q  +PP K+K V     + EK+K+
Sbjct: 30 PLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQ 69


>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
           domain-containing protein contains Pfam profiles:
           PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
           family associated with various cellular activities (AAA)
          Length = 956

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)

Query: 38  RIPPAKRKR--VETDSPQTEKVKKK-PN 62
           ++PPAK K   +ET  P TEK + K PN
Sbjct: 325 KVPPAKGKNKIIETSLPWTEKYRPKVPN 352


>At4g16660.1 68417.m02517 heat shock protein 70, putative / HSP70,
           putative
          Length = 867

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 22  IIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQFDILDSEE 81
           +  ST+   K    QD++   K  ++    P+ EKV K  NTT     +K+  +    EE
Sbjct: 805 VFTSTEVYAKVFTLQDKV--TKVNKIPKPKPKIEKVTKTENTTKEEEQSKSSDEAAKEEE 862

Query: 82  S 82
           S
Sbjct: 863 S 863


>At3g17760.1 68416.m02266 glutamate decarboxylase, putative similar
           to glutamate decarboxylase GB:Q07346 [Petunia x hybrida]
           (J. Biol. Chem. 268 (26), 19610-19617 (1993))
          Length = 494

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 13  ITQDINVPEIIFSTKDQIKH 32
           +++DI VP + FS KD  KH
Sbjct: 366 VSKDIGVPLVAFSLKDSSKH 385


>At1g19490.1 68414.m02428 bZIP transcription factor family protein
          contains Pfam profile: PF00170 bZIP transcription
          factor
          Length = 471

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 44 RKRVETDSPQTEKVKKKPNTTT 65
          RKRV+T+SP ++ + K P++ T
Sbjct: 65 RKRVKTESPPSDSLLKPPDSDT 86


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,086,833
Number of Sequences: 28952
Number of extensions: 110100
Number of successful extensions: 377
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 11
length of query: 147
length of database: 12,070,560
effective HSP length: 75
effective length of query: 72
effective length of database: 9,899,160
effective search space: 712739520
effective search space used: 712739520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)