GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000917-TA|BGIBMGA000917-PA|undefined
         (147 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       26   0.16 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.1  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   1.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   7.8  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 16/73 (21%), Positives = 32/73 (43%)

Query: 4   KARSNSLGTITQDINVPEIIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNT 63
           +ARS S  T+ Q +  PE      D  KHD  +     +    + ++  +  + K + + 
Sbjct: 61  RARSVSYSTVIQSVPHPETEKDWGDGDKHDRHERHFESSFGNNLHSEKAKFNESKWQDSG 120

Query: 64  TTYAITTKNQFDI 76
            +   TT+  ++I
Sbjct: 121 ESPGFTTERNWEI 133


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 17  INVPEIIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQ 73
           I +   +  ++ QIK  W Q+R    K+   +   P T+ V++K N      TTK +
Sbjct: 264 IEIAHTLVLSERQIKI-WFQNRRMKWKK---DNKLPNTKNVRRKTNPAGVTTTTKGK 316


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 40  PPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQ 73
           PP K  R+  D+   +  + +P   TY    KNQ
Sbjct: 210 PPEKHLRLRRDTAPPQWYQHQPLLFTYTDDGKNQ 243


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 17  INVPEIIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQ 73
           I +   +  ++ QIK  W Q+R    K+   +   P T+ V++K N      TTK +
Sbjct: 264 IEIAHTLVLSERQIKI-WFQNRRMKWKK---DNKLPNTKNVRRKTNPAGVTTTTKGK 316


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 39  IPPAKRKRVETDSPQTEKVKKKPNTTTYAI--TTKNQFDILDSEES 82
           + P  +  V+    + +K K KPN+TT       K + ++ DSE++
Sbjct: 258 VVPEVQCAVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKT 303


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/45 (20%), Positives = 19/45 (42%)

Query: 35   QQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQFDILDS 79
            QQ+ IPP   +    ++ + E+ +  P+  +  +    Q     S
Sbjct: 1771 QQETIPPIDEEPPSVEAVEEEREEAPPSVHSSTVVPPPQHSTTQS 1815


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,705
Number of Sequences: 317
Number of extensions: 1126
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 147
length of database: 114,650
effective HSP length: 51
effective length of query: 96
effective length of database: 98,483
effective search space:  9454368
effective search space used:  9454368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)