GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000917-TA|BGIBMGA000917-PA|undefined
         (147 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958...    30   0.65 
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296...    29   1.5  
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688...    28   3.5  
01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160...    27   4.6  

>01_07_0019 +
           40494709-40494767,40495619-40495703,40495777-40495836,
           40495934-40496044,40496127-40496204,40496276-40496347,
           40496944-40497057,40498034-40498538,40499011-40499108,
           40499185-40499215,40499346-40499520,40499849-40500008,
           40501436-40501855,40502313-40503203
          Length = 952

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 27  KDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAIT 69
           KD    D + D  PPAK+K   TD  QT+K K+K  T   A T
Sbjct: 236 KDNAGSDEEPDE-PPAKKKA--TDDKQTKKAKEKDATAKKAST 275


>02_05_0583 +
           30128795-30129158,30129342-30129505,30129602-30129665,
           30130082-30130215,30130369-30130452,30130580-30130654,
           30130734-30130805,30130892-30130965,30131217-30131269,
           30131388-30131497,30131824-30131892,30131975-30132049,
           30132449-30132508,30132555-30132647,30132718-30132797,
           30132877-30132976,30133153-30133590
          Length = 702

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 4   KARSNSLGTITQDINVPEIIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQT 54
           K  SN++   ++  NVPE      D    D Q+  I   K K V+T + +T
Sbjct: 559 KKLSNTIPVASESSNVPEEAIEKADPSSDDPQKQPIQSKKHKDVKTTNEET 609


>05_06_0191 -
           26265460-26267016,26267858-26268356,26268789-26268859,
           26269079-26269515,26269626-26269681,26269682-26270479,
           26270918-26270973
          Length = 1157

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 28  DQIKHDWQQDRIPPAKRKRVETDSPQ 53
           D++ H +   R  PAKR R  T  PQ
Sbjct: 107 DEVSHSFALSRFNPAKRLRFPTSKPQ 132


>01_07_0269 -
           42414345-42415328,42415419-42415551,42415939-42416007,
           42416459-42416672,42416785-42417040
          Length = 551

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 54  TEKVKKKPNTTTYAITTKNQFDI--LDSEES 82
           TE+ K  PNTT+ A  TKN   +  +D EES
Sbjct: 361 TERSKMAPNTTSGASKTKNCMKVYPMDMEES 391


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,656
Number of Sequences: 37544
Number of extensions: 115009
Number of successful extensions: 324
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 4
length of query: 147
length of database: 14,793,348
effective HSP length: 76
effective length of query: 71
effective length of database: 11,940,004
effective search space: 847740284
effective search space used: 847740284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)