Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000917-TA|BGIBMGA000917-PA|undefined
(147 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.29
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_32614| Best HMM Match : UPF0149 (HMM E-Value=6.1) 29 1.6
SB_30977| Best HMM Match : UPF0149 (HMM E-Value=6.1) 29 1.6
SB_35775| Best HMM Match : RF-1 (HMM E-Value=0.0061) 28 2.7
SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05) 27 4.7
SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079) 27 4.7
SB_28851| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 27 4.7
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06) 27 6.3
SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 27 8.3
SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 8.3
>SB_21211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 31.5 bits (68), Expect = 0.29
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 25 STKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAIT-TKNQFDILDSEEST 83
S + + + D+ +RIPP K RV ++ P E ++ + + T+N D + ES+
Sbjct: 304 SGQGECERDFTPERIPPKKPNRVNSNVPNDEDFSSHTDSNDHVTSDTQNDADFSSNTESS 363
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 45 KRVETDSPQTEKVKKKP--NTTTYAITTKNQFDILDSEES 82
++ ETDS QTEKVK +P N ++ + Q+ L+S+ S
Sbjct: 72 EKTETDSGQTEKVKSEPTANLAKPSVFSTPQYGNLESKLS 111
>SB_32614| Best HMM Match : UPF0149 (HMM E-Value=6.1)
Length = 175
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 25 STKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQFDILDSEESTT 84
+TK Q K Q+ + K ++ DS +T +KKK N + +T + ++LD+E + T
Sbjct: 31 ATKKQTKRKGQKRK---DKLPLLQQDSKKTSTLKKKLNRKSTDVTIRLNDEVLDTEGAKT 87
>SB_30977| Best HMM Match : UPF0149 (HMM E-Value=6.1)
Length = 166
Score = 29.1 bits (62), Expect = 1.6
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 25 STKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQFDILDSEESTT 84
+TK Q K Q+ + K ++ DS +T +KKK N + +T + ++LD+E + T
Sbjct: 31 ATKKQTKRKGQKRK---DKLPLLQQDSKKTSTLKKKLNRKSTDVTIRLNDEVLDTEGAKT 87
>SB_35775| Best HMM Match : RF-1 (HMM E-Value=0.0061)
Length = 243
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 53 QTEKVKKKPNTTTYAITTKNQFDILDSEESTTD 85
Q K+KK+ TYA K + +I+DS +STTD
Sbjct: 210 QIAKIKKRK--ATYARRRKQREEIIDSIDSTTD 240
>SB_36274| Best HMM Match : SH2 (HMM E-Value=9.6e-05)
Length = 292
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Query: 12 TITQDINVPEIIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYA 67
T+T++ P + ST Q K PA R + +E +KPNT T A
Sbjct: 127 TLTEEFRQPLPLASTTIQTKPHPDFSISSPASRSNTSETNSASEDNGRKPNTITMA 182
>SB_49479| Best HMM Match : R3H (HMM E-Value=0.0079)
Length = 605
Score = 27.5 bits (58), Expect = 4.7
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 14 TQDINVPEIIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVK--KKPNTTTYAITTK 71
T + + P + ++K K ++R+ K K V +P K K KKP T+T +T
Sbjct: 366 TANKSKPVVNKTSKSNQKEKTDEERLSGDKDKDVVQVNPTIPKPKSSKKPTTSTKRQSTS 425
Query: 72 NQFDILDSEESTTDNXXXXXXXXXXXXFVTGVNRTLK 108
+ +E +T V G + + K
Sbjct: 426 TETQSTSAEGQSTSTYGQSTSTEEQSTSVEGQSTSTK 462
>SB_28851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 27.5 bits (58), Expect = 4.7
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 12 TITQDINVPEIIFSTKDQIK------HDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTT 65
TI QDI VP + S D+ + +D A +E+D +T + KK+ + T
Sbjct: 82 TIVQDIWVPPDVESDHDEDYVPDLEGFEGSEDEKGVADDMEMESDGLETSESKKELKSDT 141
Query: 66 YAITTKNQFDILDSEEST 83
++ N+ ++ EST
Sbjct: 142 KSVKKANKRKTMNESEST 159
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 7 SNSLGTITQDINVPEIIFSTKDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNT 63
S L I++ IN +S D+I+HD Q D + + +V+ Q + +K + T
Sbjct: 1338 SGLLNAISEQINKTNFHYSESDRIEHDSQLDLVADLE-AQVKALKQQNDLLKAEKET 1393
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 27.1 bits (57), Expect = 6.3
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 48 ETDSPQTEKVKKKPNTTTYAITTKNQFDILDSEESTTD 85
ET PQT K +TTT T Q DS +STTD
Sbjct: 1217 ETTVPQTSA---KRSTTTAPTTNDKQHPRTDSRKSTTD 1251
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.1 bits (57), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 2 FTKARSNSLGTITQDINVPEIIFST 26
F+ A N+ GT +D +PEIIF T
Sbjct: 2004 FSYATGNNNGTSVEDGQIPEIIFYT 2028
>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1090
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 35 QQDRIPPAKRKRVETDSPQTEKVKKKPNTTT 65
+Q++ PP K+K T SP E+VK P T
Sbjct: 992 KQEQAPPQKKK--ATRSPSVEEVKPSPEQQT 1020
>SB_15615| Best HMM Match : SAMP (HMM E-Value=0.06)
Length = 932
Score = 27.1 bits (57), Expect = 6.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 35 QQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQFDILDSEESTTDN 86
Q D + +R E+ PQT + +P +TYA DI+DSEE D+
Sbjct: 172 QVDTLERLERNMHESRVPQTPEPVAQPVDSTYA-------DIIDSEEEDEDD 216
>SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 26.6 bits (56), Expect = 8.3
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 36 QDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITTKNQFDILDSEESTTDN 86
+DR+P KRK ET + K K + T K D+ + +TDN
Sbjct: 13 EDRVPAKKRKLSETKLKSSPKSAKATPSKTGDKQRKKTPKDQDTNKGSTDN 63
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 26.6 bits (56), Expect = 8.3
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 27 KDQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKK 60
K QI+ D ++ ++ K + VE + + E+V+KK
Sbjct: 540 KQQIQEDKEKKKLQKEKDRAVEREKREKERVQKK 573
>SB_34111| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 757
Score = 26.6 bits (56), Expect = 8.3
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 18 NVPEIIFSTKDQIKHDWQQDRIPPAKRKRVETD---SPQTEKVKKKPNTTTYAITTKNQF 74
N E S++ Q ++ ++ I KRK + + S + K K+K N+T K+
Sbjct: 278 NCEEAAQSSRQQEGNESKRSDIVAKKRKVIPANRDSSKKQVKKKRKANSTAITEEKKDTT 337
Query: 75 DILDSEESTTDNXXXXXXXXXXXXFVTGVNRTLKRKRVFNSFPD 118
LDS++ T ++ R R++ F S D
Sbjct: 338 KDLDSKQLNTGEKNIRAIRDLENKEISTEKRRKARRKKFESSGD 381
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.130 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,410,715
Number of Sequences: 59808
Number of extensions: 159138
Number of successful extensions: 556
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 18
length of query: 147
length of database: 16,821,457
effective HSP length: 76
effective length of query: 71
effective length of database: 12,276,049
effective search space: 871599479
effective search space used: 871599479
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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