GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000917-TA|BGIBMGA000917-PA|undefined
         (147 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   3.1  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            22   9.5  
AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    22   9.5  

>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
          acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 16 DINVPEIIFSTKDQIKHDWQQDR 38
          D+N+ + I +T   ++H+WQ  +
Sbjct: 74 DLNLKDQILTTNIWLEHEWQDHK 96


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 34   WQQDRIPPAKRKRVETDSP 52
            WQQ  I PA  +  + D P
Sbjct: 1076 WQQQPIDPATMRMEKVDQP 1094


>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 1   MFTKARSNSLGTITQDINVPEIIFSTKDQIKHDWQQDRIPP-AKRKRVETDSPQTEKVKK 59
           +FT+ +   L       + P+++   K  IK D +++R+    K +R +    + +K ++
Sbjct: 193 IFTEEQLEQLEATFDKTHYPDVLLREKLAIKVDLKEERVEVWFKNRRAKW---RKQKREE 249

Query: 60  KPNTTTYAITTK 71
           +   + Y I +K
Sbjct: 250 QEQFSNYEINSK 261


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,454
Number of Sequences: 2123
Number of extensions: 4448
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 147
length of database: 516,269
effective HSP length: 58
effective length of query: 89
effective length of database: 393,135
effective search space: 34989015
effective search space used: 34989015
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)