GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000917-TA|BGIBMGA000917-PA|undefined
         (147 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein.                 29   4.7  
AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein p...    29   4.7  
BC045642-1|AAH45642.1|  582|Homo sapiens metadherin protein.           29   8.2  
AY082966-1|AAL92861.1|  582|Homo sapiens LYRIC protein.                29   8.2  
AF501310-1|AAP30791.1|  582|Homo sapiens LYRIC/3D3 protein.            29   8.2  
AF411226-1|AAO65771.1|  582|Homo sapiens astrocyte elevated gene...    29   8.2  

>Z15005-1|CAA78727.1| 2663|Homo sapiens CENP-E protein.
          Length = 2663

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 29   QIKHDWQQDRIPPAKRKRVETDSPQTEKV--KKKPNTTTYAITTKNQFDILDS 79
            ++KHD  ++ I     K  E+ S Q + +  K+K N TT  ++   QF   DS
Sbjct: 1362 EVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDS 1414


>AB209996-1|BAE06078.1| 2585|Homo sapiens CENPE variant protein
            protein.
          Length = 2585

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 29   QIKHDWQQDRIPPAKRKRVETDSPQTEKV--KKKPNTTTYAITTKNQFDILDS 79
            ++KHD  ++ I     K  E+ S Q + +  K+K N TT  ++   QF   DS
Sbjct: 1342 EVKHDQLKEHIRETLAKIQESQSKQEQSLNMKEKDNETTKIVSEMEQFKPKDS 1394


>BC045642-1|AAH45642.1|  582|Homo sapiens metadherin protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 19  VPEIIFSTKDQIKHDWQQDRIPPAKRK-RVETDSPQTEKVKKKPNTTT 65
           VP I+  T D+ K + +Q+ +PP++ K     +SP+  K KKK    T
Sbjct: 536 VPPILQET-DKSKSNTKQNSVPPSQTKSETSWESPKQIKKKKKARRET 582


>AY082966-1|AAL92861.1|  582|Homo sapiens LYRIC protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 19  VPEIIFSTKDQIKHDWQQDRIPPAKRK-RVETDSPQTEKVKKKPNTTT 65
           VP I+  T D+ K + +Q+ +PP++ K     +SP+  K KKK    T
Sbjct: 536 VPPILQET-DKSKSNTKQNSVPPSQTKSETSWESPKQIKKKKKARRET 582


>AF501310-1|AAP30791.1|  582|Homo sapiens LYRIC/3D3 protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 19  VPEIIFSTKDQIKHDWQQDRIPPAKRK-RVETDSPQTEKVKKKPNTTT 65
           VP I+  T D+ K + +Q+ +PP++ K     +SP+  K KKK    T
Sbjct: 536 VPPILQET-DKSKSNTKQNSVPPSQTKSETSWESPKQIKKKKKARRET 582


>AF411226-1|AAO65771.1|  582|Homo sapiens astrocyte elevated gene-1
           AEG1 protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 19  VPEIIFSTKDQIKHDWQQDRIPPAKRK-RVETDSPQTEKVKKKPNTTT 65
           VP I+  T D+ K + +Q+ +PP++ K     +SP+  K KKK    T
Sbjct: 536 VPPILQET-DKSKSNTKQNSVPPSQTKSETSWESPKQIKKKKKARRET 582


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,965,835
Number of Sequences: 224733
Number of extensions: 610886
Number of successful extensions: 4898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4893
Number of HSP's gapped (non-prelim): 7
length of query: 147
length of database: 73,234,838
effective HSP length: 83
effective length of query: 64
effective length of database: 54,581,999
effective search space: 3493247936
effective search space used: 3493247936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)