GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000917-TA|BGIBMGA000917-PA|undefined
         (147 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   0.99 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.3  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
          acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 0.99
 Identities = 7/23 (30%), Positives = 15/23 (65%)

Query: 16 DINVPEIIFSTKDQIKHDWQQDR 38
          D+N+ + I +T   ++H+WQ  +
Sbjct: 59 DLNLKDQILTTNVWLEHEWQDHK 81


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 39  IPPAKRKRVETDSPQTEKVKKKPNTTT 65
           + P  +  V+    + +K K KPN+TT
Sbjct: 257 VVPEYQCAVKRKEEKAQKEKDKPNSTT 283


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 111 RVFNSFPDIINSHA 124
           RVFN+  D++  HA
Sbjct: 242 RVFNTLVDLVPKHA 255


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 28  DQIKHDWQQDRIPPAKRKRVETDSPQTEKVKKKPNTTTYAITT 70
           D+IK +  +D        R E+ +  T+       TTT A TT
Sbjct: 185 DEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTTTGATTT 227


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,484
Number of Sequences: 429
Number of extensions: 1394
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 147
length of database: 140,377
effective HSP length: 52
effective length of query: 95
effective length of database: 118,069
effective search space: 11216555
effective search space used: 11216555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)