Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000916-TA|BGIBMGA000916-PA|undefined
(95 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 26 0.85
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 2.0
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 2.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 24 3.4
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 24 3.4
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po... 24 4.5
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 24 4.5
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 23 6.0
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 23 7.9
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 23 7.9
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 23 7.9
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 0.85
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 38 FVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLTILR 78
FV+ +I IL G SFG P+ Y N T V + M+ +R
Sbjct: 225 FVMTIINILEG------SFGGPVIYKNDTFVSSTMVRAAIR 259
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.0 bits (52), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 12 LYSLKLKNYLAPIYTKLLHASIGLLTFV 39
+ SL + LA I+ + HAS G+LT+V
Sbjct: 330 IISLDKRPLLAKIFKVIHHASRGILTYV 357
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 24.6 bits (51), Expect = 2.6
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 1 MLVTMMGGLGALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPI 60
+L+ ++ LG L+++ + T LL A + + ++T+L L RW+S +
Sbjct: 270 VLLFLVSRLGQRAFCDLRDHNVTLIT-LLKAFPSVQLPLDHLLTVLPQLMPRWYSLSNDP 328
Query: 61 RYTNFTLVLAIMLLTI 76
+ +N L A+ ++ I
Sbjct: 329 KVSNNVLEFAVTVVEI 344
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.2 bits (50), Expect = 3.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 38 FVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLTILRPSLKIY 84
+ + I +LLGL R FG+ + F+ +L+ T+ +P L Y
Sbjct: 2525 YKIAPINVLLGLLAREELFGNTLVMNTFSELLS----TLTKPLLSFY 2567
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 24.2 bits (50), Expect = 3.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 51 TRWWSFGDPIRYTNFTLVLAI 71
TR W FG+P + T LA+
Sbjct: 410 TRTWHFGEPSEFERQTATLAL 430
>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 23.8 bits (49), Expect = 4.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 9/44 (20%)
Query: 4 TMMGGLGALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITILL 47
T +G L L+ +K+ P++T + + LLT +LG++ I L
Sbjct: 11 TSVGFLAELFLMKI-----PLFTVI----VALLTIILGIVNIFL 45
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 23.8 bits (49), Expect = 4.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 34 GLLTFVLGVITILLGLF 50
GL+ F+ G+I + GLF
Sbjct: 166 GLIAFIAGIINLAAGLF 182
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 23.4 bits (48), Expect = 6.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 65 FTLVLAIMLLTILRPSLKIYFRLKE 89
+TL+ A++L+ + PS K+ + L E
Sbjct: 81 WTLIPALILILVALPSFKLLYLLDE 105
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 23.0 bits (47), Expect = 7.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 25 YTKLLHASIGLLTFVLGVITILLG 48
Y + + +IG++ F+L +IT LG
Sbjct: 108 YPRTMTWNIGVIIFLLTIITAFLG 131
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 23.0 bits (47), Expect = 7.9
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 33 IGLLTFVLGVITILLGL----FTRWWSFGDPIRYTNFTLV 68
+G++T GV+ LLGL T W+ + + Y F ++
Sbjct: 285 VGIVTITTGVVLFLLGLNIGSTTGHWAHANVLCYLIFGIL 324
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 23.0 bits (47), Expect = 7.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 17 LKNYLAPIYTKLLHASIGLLTFVLGVITI 45
L Y+A L H + LL F+LG+ I
Sbjct: 164 LAKYVAKAIQGLAHIILSLLLFILGLEVI 192
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.331 0.147 0.443
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,410
Number of Sequences: 5004
Number of extensions: 14753
Number of successful extensions: 47
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 12
length of query: 95
length of database: 2,362,478
effective HSP length: 62
effective length of query: 33
effective length of database: 2,052,230
effective search space: 67723590
effective search space used: 67723590
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 47 (23.0 bits)
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