Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000916-TA|BGIBMGA000916-PA|undefined
(95 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0934 - 7212408-7212794,7212887-7213416,7214192-7214302,721... 30 0.31
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070... 30 0.31
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 29 0.72
08_02_1313 - 26065192-26065491,26065603-26065857,26067611-260677... 27 1.7
06_03_0563 + 22203175-22203231,22203689-22204060 27 1.7
01_01_0815 + 6352634-6352910,6353005-6353220,6353355-6353506,635... 27 2.9
01_01_0814 + 6339906-6340173,6340286-6340501,6341908-6342056,634... 27 2.9
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 26 3.8
12_02_0905 - 24188563-24189189,24189648-24190577 26 5.1
12_02_0527 + 20047027-20047281,20048169-20048390,20048996-200493... 26 5.1
09_04_0184 - 15393441-15393642,15393789-15393940,15394047-153942... 26 5.1
09_02_0018 + 3016137-3016186,3016529-3016776,3018717-3018811,302... 26 5.1
>06_01_0934 -
7212408-7212794,7212887-7213416,7214192-7214302,
7214322-7214811
Length = 505
Score = 29.9 bits (64), Expect = 0.31
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 7 GGLGALYSLKLKNYLAPIYTKLLHASIGLLTFVLG-VITILLG 48
GG A++ ++N AP+ KL+ + GL T VLG ++ IL+G
Sbjct: 130 GGATAMHEA-VRNGYAPVLQKLMSSDSGLATAVLGDMVGILIG 171
>05_05_0338 +
24204301-24206262,24206337-24206495,24206864-24207035,
24207544-24207842,24208301-24208355,24208438-24208487,
24208522-24208827
Length = 1000
Score = 29.9 bits (64), Expect = 0.31
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 29 LHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLTIL 77
LH ++ V +++I++GL T+ W G Y F ++L+I+L+ ++
Sbjct: 100 LHDLTLIILVVCALVSIVVGLATKGWPMG---IYDGFGIILSILLVVLV 145
>02_05_0481 +
29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.7 bits (61), Expect = 0.72
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 36 LTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLTI-LRPSLKIY 84
L F+L + L+GLF G I Y +F +L LT+ L P + +Y
Sbjct: 938 LAFLLALAAFLMGLFQEKPFVGASIGYFSFLFLLTGRALTVLLSPPIVVY 987
>08_02_1313 -
26065192-26065491,26065603-26065857,26067611-26067718,
26068637-26068738
Length = 254
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 11 ALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITILLGL 49
AL+ K++ IY H S+G +LG++ I G+
Sbjct: 158 ALFLRPKKDHKYRIYWNAYHHSVGYTIIILGIVNIFKGM 196
>06_03_0563 + 22203175-22203231,22203689-22204060
Length = 142
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 33 IGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLTIL 77
+ TF+ G +L+GL R +S G + + LV+A+ T+L
Sbjct: 74 LAFATFICGSALMLVGLAGRLFSGGRRVAVVSMCLVVALSAQTLL 118
>01_01_0815 +
6352634-6352910,6353005-6353220,6353355-6353506,
6355713-6355989,6356064-6356090,6356736-6356998
Length = 403
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 54 WSFGDPIRYTNFTLVLAIMLLTILRPSLKIYF 85
W F + RY N L+ A+ LL PS I F
Sbjct: 259 WRFNELARYHNAALLAAVSLLRRKYPSATIVF 290
>01_01_0814 +
6339906-6340173,6340286-6340501,6341908-6342056,
6342157-6342433,6342736-6343019
Length = 397
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 54 WSFGDPIRYTNFTLVLAIMLLTILRPSLKIYF 85
W F RY N L A+ LL PS+ I F
Sbjct: 255 WRFNALARYHNAVLFAAVSLLRAKHPSVAIVF 286
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 19 NYLAPIYTKLLHASIGLLTFVLGVITILLGLFT 51
N L P+ KLLHA + L + G+ ++LL T
Sbjct: 803 NRLPPLTVKLLHARLLRLDLLAGLSSLLLRALT 835
>12_02_0905 - 24188563-24189189,24189648-24190577
Length = 518
Score = 25.8 bits (54), Expect = 5.1
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 36 LTFVLGVITILLGLFTRWWSFGD 58
+T +L V+ +++ + RWWS G+
Sbjct: 16 ITVLLFVVVVVVVVLVRWWSGGE 38
>12_02_0527 +
20047027-20047281,20048169-20048390,20048996-20049354,
20049706-20049766,20049911-20050018
Length = 334
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 38 FVLGVITIL--LGLFTRWWSFGDPIRYTNFTLVLAIMLLTILRPSLKIYFRL 87
FV+ ++ I+ LG WW +TN L +A L+ +L + K F++
Sbjct: 255 FVISIVNIIIWLGAGGFWWKMLGLCAFTNLHLQIA-ELVVVLSQNTKFKFKM 305
>09_04_0184 -
15393441-15393642,15393789-15393940,15394047-15394208,
15394372-15394585,15395017-15395297
Length = 336
Score = 25.8 bits (54), Expect = 5.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 10 GALYSLKLKNYLAPIYTKL----LHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNF 65
G LYS A I T L LH + + + +LG I I++GL+ W D +
Sbjct: 239 GPLYSAIFTPLSAVITTILSTIFLHEELHIGS-ILGAIAIIIGLYVVLWGKADDAKSEGL 297
Query: 66 TLV 68
T++
Sbjct: 298 TIL 300
>09_02_0018 +
3016137-3016186,3016529-3016776,3018717-3018811,
3020025-3020330,3021288-3021336,3021436-3021637,
3023364-3023532,3023605-3023634,3023742-3023807,
3025313-3025378,3029404-3029464,3029592-3029719,
3030716-3030757,3031074-3031190,3031280-3031339
Length = 562
Score = 25.8 bits (54), Expect = 5.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 11 ALYSLKLKNYLAPIY--TKLLHASIG-LLTFVLGVITILLGLFTRWW 54
AL SL + N L I + L+ + LL F++GV+ L+GL W
Sbjct: 274 ALVSLLVSNVLGGIVDSSSELYTELAILLAFMVGVLECLMGLLRLGW 320
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.331 0.147 0.443
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,905
Number of Sequences: 37544
Number of extensions: 82502
Number of successful extensions: 266
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 256
Number of HSP's gapped (non-prelim): 13
length of query: 95
length of database: 14,793,348
effective HSP length: 70
effective length of query: 25
effective length of database: 12,165,268
effective search space: 304131700
effective search space used: 304131700
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)
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