GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000916-TA|BGIBMGA000916-PA|undefined
         (95 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)                 30   0.32 
SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06)                 27   1.7  
SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.2  
SB_51519| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.9  
SB_33717| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.2  
SB_40192| Best HMM Match : DREV (HMM E-Value=0.6)                      25   9.2  
SB_30888| Best HMM Match : CARDB (HMM E-Value=0.85)                    25   9.2  

>SB_47699| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-23)
          Length = 335

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 3   VTMMGGLGALYSLKLKNYLA---PI-YTKLLHASIGLLTFVLGVITILLGLFTRWWSFGD 58
           V ++ G   + S+ L  YLA   P  YT L+      +TF+    +ILL +    W  G+
Sbjct: 77  VVLISGAANITSVTLDRYLAITKPFKYTDLMRKYFKYITFITWTTSILLAVLPLGWYAGN 136

Query: 59  PIRYTNFTLVLAIMLLTILRPSLKIYF 85
                +   V   + L ++ P   + F
Sbjct: 137 ITEVFHKVYVFITIGLGVITPYFFVLF 163


>SB_56637| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-06)
          Length = 269

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 6  MGGLGALYSLKLKNYLA---PI-YTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPIR 61
          + G   + S+ L  YLA   P  YT L+      +TF+    +ILL +    W  G+   
Sbjct: 14 ISGAANITSVTLDRYLAITKPFKYTDLMRKYFKYITFITWTTSILLAVLPLGWYAGNITE 73

Query: 62 YTNFTLVLAIMLLTILRPSLKIYF 85
            +   V   + L ++ P   + F
Sbjct: 74 VFHKVYVFITIGLGVITPYFFVLF 97


>SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1123

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 2   LVTMMGGL-GALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITILLGLF 50
           +V + G + G ++SL L      I+T  +  SI ++  +LGV+ +++G+F
Sbjct: 906 VVAVNGAIYGIVFSLILCMVAVVIFTGHILLSIIVMLTILGVLCLVVGVF 955


>SB_51519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 59 PIRYTNFTLVLAIMLLTILRPSL---KIYFRLKERIEN 93
          P RYTN T        TI RPSL   K Y  L  R  N
Sbjct: 46 PSRYTNHTAPFRHATTTIQRPSLTLQKPYSALPSRYNN 83


>SB_33717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 40  LGV-ITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLTILRPSL 81
           LGV +  L+  F   W+  DPI    F++++    L IL+ +L
Sbjct: 198 LGVFVAALIIWFKPEWAIADPICTFIFSIIVLFTTLAILKDAL 240


>SB_59201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1326

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/19 (52%), Positives = 16/19 (84%)

Query: 33   IGLLTFVLGVITILLGLFT 51
            +G+ TFV+GV T+++GL T
Sbjct: 1156 VGVKTFVVGVETLVVGLDT 1174


>SB_40192| Best HMM Match : DREV (HMM E-Value=0.6)
          Length = 725

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 34  GLLTFVLGVITILLGLFTRW 53
           G ++ + GV T LLG++ RW
Sbjct: 354 GCMSHITGVATGLLGVYLRW 373


>SB_30888| Best HMM Match : CARDB (HMM E-Value=0.85)
          Length = 299

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 50 FTRWWSFGDPIRYTNFTLVLAIMLLTILRP 79
          FTR+W+  DP  Y N T+   + +L I  P
Sbjct: 45 FTRYWTIRDPCGY-NTTVPQTVKVLGIQPP 73


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.331    0.147    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,204
Number of Sequences: 59808
Number of extensions: 88087
Number of successful extensions: 321
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 14
length of query: 95
length of database: 16,821,457
effective HSP length: 70
effective length of query: 25
effective length of database: 12,634,897
effective search space: 315872425
effective search space used: 315872425
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)