Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000916-TA|BGIBMGA000916-PA|undefined
(95 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm recep... 37 0.002
AF016433-1|AAB65388.1| 346|Caenorhabditis elegans Seven tm rece... 33 0.040
Z78062-5|CAB01500.1| 516|Caenorhabditis elegans Hypothetical pr... 29 0.37
AL021571-6|CAA16515.1| 516|Caenorhabditis elegans Hypothetical ... 29 0.37
AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical ... 29 0.37
Z49968-11|CAA90264.1| 880|Caenorhabditis elegans Hypothetical p... 28 0.86
Z49966-8|CAA90246.1| 880|Caenorhabditis elegans Hypothetical pr... 28 0.86
AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical ... 28 0.86
AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical ... 28 0.86
AF016433-3|AAB65390.1| 336|Caenorhabditis elegans Seven tm rece... 28 1.1
Z75527-1|CAA99774.1| 441|Caenorhabditis elegans Hypothetical pr... 27 1.5
AF016424-4|AAT68893.1| 152|Caenorhabditis elegans Hypothetical ... 27 1.5
AF016424-3|AAB65330.1| 251|Caenorhabditis elegans Hypothetical ... 27 1.5
U55856-2|AAA98021.1| 197|Caenorhabditis elegans Touch abnormal ... 27 2.0
Z83216-12|CAB05675.2| 323|Caenorhabditis elegans Hypothetical p... 27 2.6
Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical pr... 27 2.6
AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel... 27 2.6
AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologou... 27 2.6
AF016433-2|AAB65389.1| 336|Caenorhabditis elegans Seven tm rece... 27 2.6
Z79754-6|CAB02095.1| 368|Caenorhabditis elegans Hypothetical pr... 26 4.6
Z73905-3|CAA98111.3| 357|Caenorhabditis elegans Hypothetical pr... 26 4.6
Z68214-1|CAA92444.1| 846|Caenorhabditis elegans Hypothetical pr... 26 4.6
CU457740-3|CAM36333.1| 367|Caenorhabditis elegans Hypothetical ... 26 4.6
AF098988-6|AAK73862.2| 367|Caenorhabditis elegans Serpentine re... 26 4.6
AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical ... 26 4.6
Z70212-4|CAA94164.1| 322|Caenorhabditis elegans Hypothetical pr... 25 6.1
Z35663-1|CAA84725.1| 324|Caenorhabditis elegans Hypothetical pr... 25 6.1
U80453-7|AAN63451.1| 286|Caenorhabditis elegans Hypothetical pr... 25 6.1
U80453-6|AAK31447.1| 349|Caenorhabditis elegans Hypothetical pr... 25 6.1
U21310-4|AAA62518.1| 165|Caenorhabditis elegans Hypothetical pr... 25 6.1
AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine re... 25 6.1
Z81533-14|CAB04336.2| 323|Caenorhabditis elegans Hypothetical p... 25 8.1
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 25 8.1
Z74033-7|CAF31474.1| 321|Caenorhabditis elegans Hypothetical pr... 25 8.1
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 25 8.1
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 25 8.1
AF025458-3|AAB70976.1| 612|Caenorhabditis elegans Hypothetical ... 25 8.1
>U53155-10|AAC48271.1| 346|Caenorhabditis elegans Seven tm receptor
protein 139 protein.
Length = 346
Score = 36.7 bits (81), Expect = 0.002
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 58 DPIRYTNFTLVLAIMLLTILRPSLKIYFRLKERIEN 93
D + Y F L++A+ LTI+ +LKIYF+LKE I +
Sbjct: 198 DFLSYLGFLLMIALCFLTIIFCALKIYFKLKEDIHS 233
>AF016433-1|AAB65388.1| 346|Caenorhabditis elegans Seven tm
receptor protein 140 protein.
Length = 346
Score = 32.7 bits (71), Expect = 0.040
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 58 DPIRYTNFTLVLAIMLLTILRPSLKIYFRLKERIEN 93
D + Y F L++A LTI+ ++KIYF+LKE + +
Sbjct: 198 DFVCYLGFLLMIASCFLTIVFCAMKIYFKLKEDLNS 233
>Z78062-5|CAB01500.1| 516|Caenorhabditis elegans Hypothetical
protein F16D3.7 protein.
Length = 516
Score = 29.5 bits (63), Expect = 0.37
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 1 MLVTMMGGLGALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITILLG---LFTRWWSFG 57
+L+T+ G L L+ K + T LL ++GL F++GVI + +G L R W FG
Sbjct: 73 ILLTIFGNLLVLF---FKARVGRTNTTLLVWNLGLTDFLVGVIVLPMGAVYLIYRKWIFG 129
>AL021571-6|CAA16515.1| 516|Caenorhabditis elegans Hypothetical
protein F16D3.7 protein.
Length = 516
Score = 29.5 bits (63), Expect = 0.37
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 1 MLVTMMGGLGALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITILLG---LFTRWWSFG 57
+L+T+ G L L+ K + T LL ++GL F++GVI + +G L R W FG
Sbjct: 73 ILLTIFGNLLVLF---FKARVGRTNTTLLVWNLGLTDFLVGVIVLPMGAVYLIYRKWIFG 129
>AF016679-5|AAB66157.1| 485|Caenorhabditis elegans Hypothetical
protein T28C12.2 protein.
Length = 485
Score = 29.5 bits (63), Expect = 0.37
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 8 GLGALYSLKLKNYLAPIYT---KLLHASIGLLTFVLGVI--TILLGLFTRWWSFG---DP 59
GLG L+ Y A T ++ S G FVLG+ ++ +FT ++G P
Sbjct: 137 GLGVGNIAALRVYAATASTPKDRMRAISFGTGGFVLGISFGPVISAVFTPLGAYGISIGP 196
Query: 60 IRYTNFTLVLAIMLLTILRPSLKIYFRLKE 89
I + FT+V +M L + IYF +E
Sbjct: 197 IVFNMFTVVAYLMALICFLSCVVIYFLFEE 226
>Z49968-11|CAA90264.1| 880|Caenorhabditis elegans Hypothetical
protein M110.7 protein.
Length = 880
Score = 28.3 bits (60), Expect = 0.86
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 49 LFTRWWSFGDPIRYTNFTLV 68
LF RWW FG+ +R N V
Sbjct: 754 LFKRWWPFGEELRVLNMNEV 773
>Z49966-8|CAA90246.1| 880|Caenorhabditis elegans Hypothetical
protein M110.7 protein.
Length = 880
Score = 28.3 bits (60), Expect = 0.86
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 49 LFTRWWSFGDPIRYTNFTLV 68
LF RWW FG+ +R N V
Sbjct: 754 LFKRWWPFGEELRVLNMNEV 773
>AL021480-3|CAA16328.1| 410|Caenorhabditis elegans Hypothetical
protein Y39E4A.2b protein.
Length = 410
Score = 28.3 bits (60), Expect = 0.86
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 28 LLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLTILRPSLKIYFRL 87
L+H IG L +GV+ L + W+ DPI F++++ +T++R I+F L
Sbjct: 259 LIHV-IGDLVQSIGVLIAALIIRFTGWTLADPICTFLFSIIVLFTTVTVMR---DIFFVL 314
Query: 88 KE 89
E
Sbjct: 315 ME 316
>AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical
protein Y39E4A.2a protein.
Length = 391
Score = 28.3 bits (60), Expect = 0.86
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 28 LLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLTILRPSLKIYFRL 87
L+H IG L +GV+ L + W+ DPI F++++ +T++R I+F L
Sbjct: 240 LIHV-IGDLVQSIGVLIAALIIRFTGWTLADPICTFLFSIIVLFTTVTVMR---DIFFVL 295
Query: 88 KE 89
E
Sbjct: 296 ME 297
>AF016433-3|AAB65390.1| 336|Caenorhabditis elegans Seven tm
receptor protein 144 protein.
Length = 336
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 56 FGDPIRYTNFTLVLAIMLLTILRPSLKIYFRLK 88
F D I + T +L TIL + KIYFRLK
Sbjct: 199 FRDIIGSSGCTFILVTCFSTILYCAFKIYFRLK 231
>Z75527-1|CAA99774.1| 441|Caenorhabditis elegans Hypothetical
protein C15C8.1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 12 LYSLKLKNYLAPIYTKLLHASIG---LLTFVLGVITILLGLFTRWW 54
L SLK+K + ++ +++ +G L L + +I+LG + WW
Sbjct: 66 LLSLKMKRDITKVFLTIVYIPLGLSSLFKIALAIYSIMLGAY-GWW 110
>AF016424-4|AAT68893.1| 152|Caenorhabditis elegans Hypothetical
protein F39G3.5b protein.
Length = 152
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 11 ALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITI 45
AL + +L Y A I +KLLH ++ ++ LG+ +
Sbjct: 82 ALLAYRLYRYDAKIISKLLHTALHIIAIGLGITAL 116
>AF016424-3|AAB65330.1| 251|Caenorhabditis elegans Hypothetical
protein F39G3.5a protein.
Length = 251
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 11 ALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITI 45
AL + +L Y A I +KLLH ++ ++ LG+ +
Sbjct: 82 ALLAYRLYRYDAKIISKLLHTALHIIAIGLGITAL 116
>U55856-2|AAA98021.1| 197|Caenorhabditis elegans Touch abnormal
protein 1 protein.
Length = 197
Score = 27.1 bits (57), Expect = 2.0
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 11 ALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITILL-----GLFTRWWSFGDPIRYTNF 65
++ S+ L N L P T L + L + LL G+F +WS D IR +N
Sbjct: 48 SVMSVPLTNELTPTITPALSDQLWLAAAAFPIEHSLLLAQRNGVFPGFWSTADQIRLSNA 107
Query: 66 TLVLAIMLLTILRPSLKIYF 85
T + L R + F
Sbjct: 108 TKAYRRLRLECSRRKARTVF 127
>Z83216-12|CAB05675.2| 323|Caenorhabditis elegans Hypothetical
protein C08F11.4 protein.
Length = 323
Score = 26.6 bits (56), Expect = 2.6
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 35 LLTFVLGVITILL---GLFTRWWSFGDPIRYTNFTLVLAIML--LTILRPSLKIYFRLKE 89
LL F+ I L GLFT W + +P Y +++ L T+L P L RL
Sbjct: 77 LLFFIADFFYIRLPVTGLFTSWCASSEPNGYLVILIIITFYLNYATMLFPCLVALLRLNS 136
Query: 90 RIENTN 95
I +N
Sbjct: 137 IIFPSN 142
>Z66514-3|CAA91343.1| 854|Caenorhabditis elegans Hypothetical
protein K01A11.4 protein.
Length = 854
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 64 NFTLVLAIMLLTILRPSLKIYFRLKERIENT 94
+ T+ L ++ ILRP++ YF + IE T
Sbjct: 364 HITMYLVFLIAAILRPTIGFYFAWTDSIEVT 394
>AY342006-1|AAQ22724.1| 854|Caenorhabditis elegans TRP-3 channel
protein protein.
Length = 854
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 64 NFTLVLAIMLLTILRPSLKIYFRLKERIENT 94
+ T+ L ++ ILRP++ YF + IE T
Sbjct: 364 HITMYLVFLIAAILRPTIGFYFAWTDSIEVT 394
>AJ276029-1|CAC81656.1| 854|Caenorhabditis elegans TRP homologous
cation channel proteinprotein.
Length = 854
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 64 NFTLVLAIMLLTILRPSLKIYFRLKERIENT 94
+ T+ L ++ ILRP++ YF + IE T
Sbjct: 364 HITMYLVFLIAAILRPTIGFYFAWTDSIEVT 394
>AF016433-2|AAB65389.1| 336|Caenorhabditis elegans Seven tm
receptor protein 143 protein.
Length = 336
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 51 TRWWSFGDPIRYTNFTLVLAIMLLTILRPSLKIYFRLK 88
+R + F D I + LV+ TIL + KIY RLK
Sbjct: 194 SRIFRFRDTIAASGCILVMVACFSTILYCAFKIYIRLK 231
>Z79754-6|CAB02095.1| 368|Caenorhabditis elegans Hypothetical
protein F25H2.7 protein.
Length = 368
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 30 HASIGLLTFVLGVITI 45
+ SIGL+TFV+GVI I
Sbjct: 7 YTSIGLVTFVVGVILI 22
>Z73905-3|CAA98111.3| 357|Caenorhabditis elegans Hypothetical
protein C32C4.3 protein.
Length = 357
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 12 LYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITILLGLF 50
+Y + PI+ L+ + L+ FV+G+I GLF
Sbjct: 223 MYFSSVPTSYTPIWPSLVAVFVVLIFFVMGLILCCCGLF 261
>Z68214-1|CAA92444.1| 846|Caenorhabditis elegans Hypothetical
protein C10C5.1 protein.
Length = 846
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 53 WWSFGDPIR-YTNFTLVLAIMLLTILRPSL--KIYF 85
W + G+ +R TNF L L + I++PSL IYF
Sbjct: 178 WSAIGNSLRRLTNFVLFLFTAYVGIVKPSLSNSIYF 213
>CU457740-3|CAM36333.1| 367|Caenorhabditis elegans Hypothetical
protein C50E10.3 protein.
Length = 367
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 25 YTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLT 75
YT+ + + L +L ++ ++ + + + +TNF +LAI++L+
Sbjct: 25 YTRYFYRGLLLAELLLSILALIYSVISGYIILTTKAFHTNFNTLLAIIVLS 75
>AF098988-6|AAK73862.2| 367|Caenorhabditis elegans Serpentine
receptor, class e (epsilon)protein 53 protein.
Length = 367
Score = 25.8 bits (54), Expect = 4.6
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 25 YTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLT 75
YT+ + + L +L ++ ++ + + + +TNF +LAI++L+
Sbjct: 25 YTRYFYRGLLLAELLLSILALIYSVISGYIILTTKAFHTNFNTLLAIIVLS 75
>AC024805-9|AAK39341.2| 237|Caenorhabditis elegans Hypothetical
protein Y51H7C.10 protein.
Length = 237
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 23 PIYTKLLHASIGLLTFVLGVITILLGLFTRW 53
P+Y + + +LTFVL V T++ L RW
Sbjct: 150 PVYVAVTVIAACILTFVLLVGTVIYFLTNRW 180
>Z70212-4|CAA94164.1| 322|Caenorhabditis elegans Hypothetical
protein R04D3.6 protein.
Length = 322
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 57 GDPIRYTNFTLVLAIMLLTILRPSLKIYF 85
G+ I + F LVL L T++ P + IYF
Sbjct: 267 GEEILFLEFFLVLIPALPTLVDPIISIYF 295
>Z35663-1|CAA84725.1| 324|Caenorhabditis elegans Hypothetical
protein T04A8.1 protein.
Length = 324
Score = 25.4 bits (53), Expect = 6.1
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 10 GALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVI---TILLGLFTRWWSFGDPIR-YTNF 65
GA +S+ K+Y +LH L FVL +I +LGL R T
Sbjct: 185 GAGFSVNYKDYFPWANISILHLFHFTLCFVLVIIFFVATILGLTMLKQRIKSAERSLTIV 244
Query: 66 TLVLAIMLLTILRPSLKIYF 85
T+++A+ +T S++IYF
Sbjct: 245 TMIMAVQTVTF--ASIQIYF 262
>U80453-7|AAN63451.1| 286|Caenorhabditis elegans Hypothetical
protein C23H3.2b protein.
Length = 286
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 16 KLKNYLAPIYTKLLHASIGLLTFVLG 41
K+KN L P Y+ LL I L F+ G
Sbjct: 210 KMKNSLLPTYSTLLLIFIDLFPFLFG 235
>U80453-6|AAK31447.1| 349|Caenorhabditis elegans Hypothetical
protein C23H3.2a protein.
Length = 349
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 16 KLKNYLAPIYTKLLHASIGLLTFVLG 41
K+KN L P Y+ LL I L F+ G
Sbjct: 273 KMKNSLLPTYSTLLLIFIDLFPFLFG 298
>U21310-4|AAA62518.1| 165|Caenorhabditis elegans Hypothetical
protein F40H6.1 protein.
Length = 165
Score = 25.4 bits (53), Expect = 6.1
Identities = 6/17 (35%), Positives = 14/17 (82%)
Query: 40 LGVITILLGLFTRWWSF 56
+G+I ++G+F+ WW++
Sbjct: 16 IGIIIHMVGIFSPWWTY 32
>AF067950-2|AAG24155.2| 365|Caenorhabditis elegans Serpentine
receptor, class w protein143 protein.
Length = 365
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 5 MMGGLGALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTN 64
++ + + +L ++N + P Y +L H L T + I ++ G + FG I N
Sbjct: 131 LLFSIALIRTLVIRNPMNPKYERLAHPPTSLFTMI--CINLIFGPISIATFFGSDITSQN 188
Query: 65 FT 66
T
Sbjct: 189 HT 190
>Z81533-14|CAB04336.2| 323|Caenorhabditis elegans Hypothetical
protein F36G9.6 protein.
Length = 323
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 33 IGLLTFVLGVITILL---GLFTRWWSFGDPIRYTNFTLVLAIML--LTILRPSLKIYFRL 87
+ LL F+ I L G+FT W + +P Y L++ L +T+L P L RL
Sbjct: 75 MSLLFFIADFFYIRLPVTGIFTSWCASVEPNGYLIIFLIITFYLNYVTMLFPCLVALLRL 134
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 12 LYSLKLKNYLAPIYTKL-LHASIGLLTFVLGVITILL 47
++ L + L P + + L A LLTFVL VITIL+
Sbjct: 274 VFLLLVSKILPPTSSTIPLMAKYLLLTFVLNVITILV 310
>Z74033-7|CAF31474.1| 321|Caenorhabditis elegans Hypothetical
protein F38B7.8 protein.
Length = 321
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/55 (23%), Positives = 24/55 (43%)
Query: 17 LKNYLAPIYTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAI 71
+ N A Y L+ ++G L V+G I+ + F + T+F L+ +
Sbjct: 1 MSNSTALDYQDSLNLTVGCLLLVIGTFGIVCNSLILYIFFNEKTERTSFNLICVL 55
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 12 LYSLKLKNYLAPIYTKL-LHASIGLLTFVLGVITILL 47
++ L + L P + + L A LLTFVL VITIL+
Sbjct: 274 VFLLLVSKILPPTSSTIPLMAKYLLLTFVLNVITILV 310
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 12 LYSLKLKNYLAPIYTKL-LHASIGLLTFVLGVITILL 47
++ L + L P + + L A LLTFVL VITIL+
Sbjct: 274 VFLLLVSKILPPTSSTIPLMAKYLLLTFVLNVITILV 310
>AF025458-3|AAB70976.1| 612|Caenorhabditis elegans Hypothetical
protein C01B12.3 protein.
Length = 612
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 36 LTFVLGVITILLGLFTRWWSFGDPI 60
+TF+LG + +FTRWW D I
Sbjct: 78 ITFMLGFY--VSAVFTRWWQIFDNI 100
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.331 0.147 0.443
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,461
Number of Sequences: 27539
Number of extensions: 72842
Number of successful extensions: 318
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 39
length of query: 95
length of database: 12,573,161
effective HSP length: 69
effective length of query: 26
effective length of database: 10,672,970
effective search space: 277497220
effective search space used: 277497220
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -