GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000916-TA|BGIBMGA000916-PA|undefined
         (95 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   0.37 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   1.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   2.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   3.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   6.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   7.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 0.37
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 12  LYSLKLKNYLAPIYTKL-LHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLA 70
           ++ L +   L P    L L A   L TF++  ++IL+ +    W+F  P  +    L+  
Sbjct: 277 VFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPQLIRK 336

Query: 71  IML 73
           I L
Sbjct: 337 IFL 339


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 15  LKLKNYLAPIYTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRY 62
           L L  ++  I+   L  +  +L     ++ +      R+W+  DPI Y
Sbjct: 97  LLLGKWIFGIHLCKLWLTCDVLCCTASILNLCAIALDRYWAITDPINY 144


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 5/14 (35%), Positives = 9/14 (64%)

Query: 43  ITILLGLFTRWWSF 56
           +  ++GLF  WW +
Sbjct: 222 VNAIMGLFVLWWGW 235


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 32  SIGLLTFVLGVITILLGLFTRWWSFGDPIRY 62
           S+ +L     ++ + +    R+W+  DP  Y
Sbjct: 124 SLDVLFSTASILNLCVISLDRYWAITDPFTY 154


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 61  RYTNFTLVLAIMLLTILRPSLKIYFR 86
           +Y  FT++L  + + I    L ++FR
Sbjct: 314 KYLLFTMILVTLSIWITVCVLNVHFR 339


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 36 LTFVLGVITILLGLFTRW 53
          + F+L V+ + +GL   W
Sbjct: 26 IEFILSVVGLAIGLGNLW 43


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 36 LTFVLGVITILLGLFTRW 53
          + F+L V+ + +GL   W
Sbjct: 79 IEFILSVVGLAIGLGNLW 96


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.331    0.147    0.443 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,943
Number of Sequences: 429
Number of extensions: 887
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 95
length of database: 140,377
effective HSP length: 49
effective length of query: 46
effective length of database: 119,356
effective search space:  5490376
effective search space used:  5490376
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.9 bits)
S2: 38 (19.4 bits)