Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000916-TA|BGIBMGA000916-PA|undefined
(95 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09450.1 68416.m01123 hypothetical protein 29 0.47
At4g32670.1 68417.m04651 expressed protein ; expression supporte... 26 3.3
At3g26570.2 68416.m03317 phosphate transporter family protein co... 26 3.3
At3g26570.1 68416.m03316 phosphate transporter family protein co... 26 3.3
At5g05740.2 68418.m00632 peptidase M50 family protein / sterol-r... 26 4.3
At5g05740.1 68418.m00631 peptidase M50 family protein / sterol-r... 26 4.3
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 26 4.3
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 25 5.7
At3g45870.1 68416.m04964 integral membrane family protein / nodu... 25 5.7
At2g39510.1 68415.m04848 nodulin MtN21 family protein similar to... 25 5.7
At1g14730.1 68414.m01761 cytochrome B561 family similar to cytoc... 25 5.7
At4g23210.1 68417.m03347 protein kinase family protein contains ... 25 7.6
At2g37460.1 68415.m04595 nodulin MtN21 family protein similar to... 25 7.6
At1g57680.2 68414.m06546 expressed protein 25 7.6
At1g57680.1 68414.m06545 expressed protein 25 7.6
At1g25500.2 68414.m03166 choline transporter-related contains we... 25 7.6
At1g25500.1 68414.m03167 choline transporter-related contains we... 25 7.6
>At3g09450.1 68416.m01123 hypothetical protein
Length = 775
Score = 29.1 bits (62), Expect = 0.47
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 9 LGALYSLKLKNYLAPI---YTKLLHASIGLLTFVLGVITI 45
+ AL L +NY AP +++ ASIGLL FV G I +
Sbjct: 493 IAALLILGRRNYGAPTEFAIARIVEASIGLLCFVFGEILV 532
>At4g32670.1 68417.m04651 expressed protein ; expression supported
by MPSS
Length = 808
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 5 MMGGLGALYSLKLKNYLAPIYTKLLHAS-IGLLTFVLGVITILLGLFTRWWSF 56
++ LG ++++ YL + T L +L+F LGV+ LLG + + +F
Sbjct: 244 LLACLGGVFTMSRDTYLTSVRTFLPSVKDTFILSFKLGVLPWLLGCWLHFCTF 296
>At3g26570.2 68416.m03317 phosphate transporter family protein
contains Pfam profile: PF01384 phosphate transporter
family
Length = 587
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 23 PIYTKLLHASIGLLTFVLGVITILLGLFTRW 53
PI+ K L + L T +L T+L G + W
Sbjct: 140 PIFMKSLGQGLALKTKLLSYATLLFGFYMAW 170
>At3g26570.1 68416.m03316 phosphate transporter family protein
contains Pfam profile: PF01384 phosphate transporter
family
Length = 613
Score = 26.2 bits (55), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 23 PIYTKLLHASIGLLTFVLGVITILLGLFTRW 53
PI+ K L + L T +L T+L G + W
Sbjct: 166 PIFMKSLGQGLALKTKLLSYATLLFGFYMAW 196
>At5g05740.2 68418.m00632 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains Pfam PF02163:
Sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 527
Score = 25.8 bits (54), Expect = 4.3
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 6 MGGLGALYSLKLKNYLAPIYTKLLHASIGLLT-FVLGVITILLGLF 50
+G GA+ ++KN +A L A+ G L F LG+I L+GLF
Sbjct: 321 IGSFGAI--TRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLF 364
>At5g05740.1 68418.m00631 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains Pfam PF02163:
Sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 556
Score = 25.8 bits (54), Expect = 4.3
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 6 MGGLGALYSLKLKNYLAPIYTKLLHASIGLLT-FVLGVITILLGLF 50
+G GA+ ++KN +A L A+ G L F LG+I L+GLF
Sbjct: 350 IGSFGAI--TRIKNIVAKREDLLKVAAAGPLAGFSLGLILFLIGLF 393
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 25.8 bits (54), Expect = 4.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 31 ASIGLLTFVLGVITILLGLFTRWWSFG---DPIRYTNFTLVLAIML 73
A + LL F+LG + G +WW + P+ YT L + ML
Sbjct: 667 ALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEML 712
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 25.4 bits (53), Expect = 5.7
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 15 LKLKNYLAPIYTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLL 74
L + AP++ K+ + L VL + G + W +FG I +T F + + L
Sbjct: 694 LTSNEFFAPMWRKMTSENRTLGEQVLDARGLNFGNQSYWNAFGALIGFTLFFNTVFALAL 753
Query: 75 TILRPS 80
T L+ S
Sbjct: 754 TFLKTS 759
>At3g45870.1 68416.m04964 integral membrane family protein / nodulin
MtN21-related simlar to MtN21 GI:2598575 (root nodule
development) Medicago truncatula, EMBL:MTY15293
Length = 385
Score = 25.4 bits (53), Expect = 5.7
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 19 NYLAPIYTKLLHASIGLLTFVLGVI--TILLGLF 50
NY P Y + SI + TF+L +I T L LF
Sbjct: 98 NYTNPTYAAAIQPSIPVFTFILALIMGTERLNLF 131
>At2g39510.1 68415.m04848 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 374
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 17 LKNYLAPIYTKLLHASIGLLTFVLGVITILLGLFTRWW 54
L + I ++ A + L +LG I I+LGL++ W
Sbjct: 284 LSMVIVAILGSIILAEVMFLGRILGAIVIVLGLYSVLW 321
>At1g14730.1 68414.m01761 cytochrome B561 family similar to
cytochrome GB:AAD11424 GI:4206110 [Mesembryanthemum
crystallinum]; contains Pfam domain, PF03188:
Cytochrome b561
Length = 152
Score = 25.4 bits (53), Expect = 5.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 29 LHASIGLLTFVLGVITILLGLFT 51
LH+ IGL TF+L + L G FT
Sbjct: 51 LHSWIGLTTFILLGVQWLFGAFT 73
>At4g23210.1 68417.m03347 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 610
Score = 25.0 bits (52), Expect = 7.6
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 20 YLAPIYTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVLAIMLLTILRP 79
Y+AP Y +L S+ + GV+ + + R SF P++ NF ++ ++++
Sbjct: 526 YMAPEYMELGEFSMKSDVYSYGVLVLEIICGKRNTSFSSPVQ--NFVTYVSTIIVSHCCC 583
Query: 80 SLKIYFR 86
+ KI+ R
Sbjct: 584 NCKIWIR 590
>At2g37460.1 68415.m04595 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 380
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 21 LAPIYTKLLHASIGLLTFVLGVITILLGLFTRWWSFGDPIRYTNFTLVL 69
+ I + ++ A L VLG + I GL+ W G +Y N TL L
Sbjct: 293 IVAIMSTIIFAEQMYLGRVLGAVVICAGLYLVIWGKGKDYKY-NSTLQL 340
>At1g57680.2 68414.m06546 expressed protein
Length = 362
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 26 TKLLHASIGLLTFVLGVITILLGLFTRWWSF 56
TKL+ + G++T L + +LLGL +SF
Sbjct: 4 TKLVPDAFGVVTICLVALLVLLGLLCIAYSF 34
>At1g57680.1 68414.m06545 expressed protein
Length = 362
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 26 TKLLHASIGLLTFVLGVITILLGLFTRWWSF 56
TKL+ + G++T L + +LLGL +SF
Sbjct: 4 TKLVPDAFGVVTICLVALLVLLGLLCIAYSF 34
>At1g25500.2 68414.m03166 choline transporter-related contains weak
similarity to CD92 protein [Homo sapiens]
gi|16945323|emb|CAC82175
Length = 488
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 2 LVTMMGGLGALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITIL 46
L + GG+G S L +++ S+ +LT L V+++L
Sbjct: 101 LYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHILTTYLAVVSVL 145
>At1g25500.1 68414.m03167 choline transporter-related contains weak
similarity to CD92 protein [Homo sapiens]
gi|16945323|emb|CAC82175
Length = 432
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 2 LVTMMGGLGALYSLKLKNYLAPIYTKLLHASIGLLTFVLGVITIL 46
L + GG+G S L +++ S+ +LT L V+++L
Sbjct: 101 LYAVAGGIGVFISWVWSLLLGSYANEMMKVSVHILTTYLAVVSVL 145
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.331 0.147 0.443
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,872
Number of Sequences: 28952
Number of extensions: 71990
Number of successful extensions: 245
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 18
length of query: 95
length of database: 12,070,560
effective HSP length: 69
effective length of query: 26
effective length of database: 10,072,872
effective search space: 261894672
effective search space used: 261894672
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -