Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000914-TA|BGIBMGA000914-PA|undefined
         (276 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29385.1 68416.m03692 hypothetical protein                          29   2.6  
At2g01130.1 68415.m00021 helicase domain-containing protein simi...    29   4.5  
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ...    28   7.9  

>At3g29385.1 68416.m03692 hypothetical protein
          Length = 218

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 143 ELCHRVRSALERFETLTDEMPKEVDLRSFLRPSR 176
           ELCH +R A + +   T+ + ++VD    + PS+
Sbjct: 28  ELCHNIRIAEQEWNLATNTLSEKVDTNEAISPSK 61


>At2g01130.1 68415.m00021 helicase domain-containing protein similar
           to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
           GI:5881579; contains Pfam profiles PF04408: Helicase
           associated domain (HA2), PF00271: Helicase conserved
           C-terminal domain
          Length = 1112

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 205 PEGKFMIADFPPWSRHWHEDSSLLAEGVLEVPVYSNESREELVFEMRVPLARSFSAETAT 264
           PEG F  AD   W++ +    S+L +  L+  V S E ++   F+    LA +    +  
Sbjct: 47  PEGTFHCADLDDWNKRF----SMLLKDSLKQEVISREKKDRRDFDKLAALATTLGLYSHA 102

Query: 265 LHTVAMF 271
              V +F
Sbjct: 103 YAKVVVF 109


>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
           Pfam PF00628: PHD-finger domain; contains TIGRFAMS
           TIGR01053: zinc finger domain, LSD1 subclass; contains
           Pfam PF00271: Helicase conserved C-terminal domain;
           similar to WSSV086 (GI:19481678)[shrimp white spot
           syndrome virus]; similar to nuclear protein Np95
           (GI:17939938) [Mus musculus]
          Length = 1299

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 131 WLGPDAPDAYIKELCHRVRSALERFETLTDEMPKE-VDLRSFLRPSRVVWALLVRAAEGR 189
           W GP+     I + CH+ ++ +    +    + +  VD++  +  +RV++     A+E R
Sbjct: 378 WCGPEFDGLLIFDECHKAKNLVPEAGSQPTRIGQAVVDIQDKIPQARVIYCSATGASEPR 437

Query: 190 N 190
           N
Sbjct: 438 N 438


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,817,407
Number of Sequences: 28952
Number of extensions: 205381
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 3
length of query: 276
length of database: 12,070,560
effective HSP length: 80
effective length of query: 196
effective length of database: 9,754,400
effective search space: 1911862400
effective search space used: 1911862400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)