GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000914-TA|BGIBMGA000914-PA|undefined
         (276 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q19542 Cluster: Putative uncharacterized protein che-3;...    44   0.006
UniRef50_Q7Z363 Cluster: Cytoplasmic dynein 2 heavy chain 1; n=7...    38   0.21 
UniRef50_Q5U9X1 Cluster: Cytoplasmic dynein heavy chain 2 protei...    37   0.49 
UniRef50_UPI0000D5799C Cluster: PREDICTED: similar to dynein, cy...    36   1.1  
UniRef50_A3DAM0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_A0EHM3 Cluster: Chromosome undetermined scaffold_97, wh...    33   7.9  

>UniRef50_Q19542 Cluster: Putative uncharacterized protein che-3; n=1;
            Caenorhabditis elegans|Rep: Putative uncharacterized
            protein che-3 - Caenorhabditis elegans
          Length = 4171

 Score = 43.6 bits (98), Expect = 0.006
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 122  KVPDEWQLLWLGPDAPDAYIKELCHRVRSALERFETLTDE--MPKEVDLRSFLRPSRVVW 179
            + PDEW  +W GP  P  Y+  +  + R  L+ FE+      +   +D      P+  + 
Sbjct: 3992 QTPDEWDSMWAGPSDPADYLNVVVKKTRGTLQLFESSKSSSLLSSPIDFSDLFYPNIFLN 4051

Query: 180  ALLVRAAEGRNCSVDTLMLAAKW 202
            AL    +      +D L+L++ W
Sbjct: 4052 ALRQTTSRQIKIPLDQLILSSAW 4074


>UniRef50_Q7Z363 Cluster: Cytoplasmic dynein 2 heavy chain 1; n=75;
            Eumetazoa|Rep: Cytoplasmic dynein 2 heavy chain 1 - Homo
            sapiens (Human)
          Length = 1732

 Score = 38.3 bits (85), Expect = 0.21
 Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 122  KVPDEWQLLWLGPDAPDAYIKELCHRVRSALERFETLTDE---MPKEVDLRSFLRPSRVV 178
            K P  WQ  W GP+ P  Y++ L  R   A++ +    ++   + + +DL     P   +
Sbjct: 1547 KCPLAWQSKWEGPEDPLQYLRGLVARA-LAIQNWVDKAEKQALLSETLDLSELFHPDTFL 1605

Query: 179  WALLVRAAEGRNCSVDTLMLAAKW--NCPEGKFMIADFPPWSRHWHEDSSLLAEGVLEVP 236
             AL    A     SVD+L   A W     E K  I            D + L+E  L+ P
Sbjct: 1606 NALRQETARAVGRSVDSLKFVASWKGRLQEAKLQIKISGLLLEGCSFDGNQLSENQLDSP 1665

Query: 237  VYSN 240
              S+
Sbjct: 1666 SVSS 1669


>UniRef50_Q5U9X1 Cluster: Cytoplasmic dynein heavy chain 2 protein;
            n=3; Tetrahymena thermophila|Rep: Cytoplasmic dynein
            heavy chain 2 protein - Tetrahymena thermophila
          Length = 4236

 Score = 37.1 bits (82), Expect = 0.49
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 120  LHKVPDEWQLLWLGPDAPDAYIKELCHRVRSALERFETL 158
            L  VP++W  +W GPD  ++++K  C RV    +  ETL
Sbjct: 4049 LGNVPEKWSKVWEGPDNANSWLKGFCSRVYQLKKWVETL 4087


>UniRef50_UPI0000D5799C Cluster: PREDICTED: similar to dynein,
            cytoplasmic, heavy polypeptide 2; n=1; Tribolium
            castaneum|Rep: PREDICTED: similar to dynein, cytoplasmic,
            heavy polypeptide 2 - Tribolium castaneum
          Length = 4199

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 122  KVPDEWQLLWLGPDAPDAYIKELCHRVRSALERFETLTDE--MPKEVDLRSFLRPSRVVW 179
            +VP  W+ LW GP  P+ Y++ +  +  + + +   L  E  +   ++L  +L PS  + 
Sbjct: 4019 QVPKCWESLWEGPKDPNRYLRSVITKTAN-ITKLRGLKSEQILQNPLNLSLYLHPSAFLA 4077

Query: 180  ALLVRAAEGRNCSVDTLMLAAKWNCPEGK 208
            +     +      +D L L + W  P  K
Sbjct: 4078 SYKQEYSRLSKIPMDQLDLESSWKAPTHK 4106


>UniRef50_A3DAM0 Cluster: Putative uncharacterized protein; n=1;
           Shewanella baltica OS155|Rep: Putative uncharacterized
           protein - Shewanella baltica OS155
          Length = 478

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 128 QLLWLGPDAPD-AYIKELCHRVRSALERFETLTDEMPK 164
           Q++WL  D PD + +K LCHR+   ++R   + D  P+
Sbjct: 165 QVVWLKVDCPDDSSVKGLCHRILDEIDRKLDIKDTKPQ 202


>UniRef50_A0EHM3 Cluster: Chromosome undetermined scaffold_97, whole
            genome shotgun sequence; n=4; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_97, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 3613

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 123  VPDEWQLLWLGPDAPDAYIKELCHRVRSALERFETL-TDEMPKEVDLRSFLRPSRVVWAL 181
            VP +W   W GPD  + ++K    ++ +     + +   +   EVDL     P   + AL
Sbjct: 3434 VPQKWSNFWEGPDDINLWLKIFIKKLNAIKSWIDKIQRKQQLDEVDLSELFHPEIYMNAL 3493

Query: 182  LVRAAEGRNCSVDTLMLAAKWN 203
              + A   N  ++ L L A ++
Sbjct: 3494 RQKTARKLNIPLNELKLQADFD 3515


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,391,228
Number of Sequences: 1657284
Number of extensions: 9529751
Number of successful extensions: 18967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 18961
Number of HSP's gapped (non-prelim): 10
length of query: 276
length of database: 575,637,011
effective HSP length: 100
effective length of query: 176
effective length of database: 409,908,611
effective search space: 72143915536
effective search space used: 72143915536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 72 (33.1 bits)