GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000914-TA|BGIBMGA000914-PA|undefined
         (276 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.9  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.8  

>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 121 HKVPDEWQLLWLGPDAPDAYIKELCHRVRSALERFETLTDEMPKEVDLRSFLRPSRVVWA 180
           H +  +W    +GP   DA+IK +  ++ S    +  + D +  E +  S+L   R+V A
Sbjct: 291 HFLYKQWSRAGMGPLPKDAFIKFV--QLLSKNRNWVLMRDIVQLE-EYNSYLLDHRIVSA 347

Query: 181 LLVRAAEGRNCSVDTLMLAAKW 202
            L   +E  N   D L L + W
Sbjct: 348 FLKPLSEKGNYK-DILSLISVW 368


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 156  ETLTDEMPKEVDLRSFLRPSRVVWALLVRAAEGRNCSVDTLMLAAKWNCPEGKFMIADFP 215
            E +T ++  E + R+F R ++  W  L       + S D L+   +W+  +G  +IAD  
Sbjct: 1402 EEITIDLTAEAEKRAFKRDAQK-WTNLEL-----DDSADLLVFVGRWSMQKGIDLIADIA 1455

Query: 216  P 216
            P
Sbjct: 1456 P 1456


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,888
Number of Sequences: 5004
Number of extensions: 39168
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 2
length of query: 276
length of database: 2,362,478
effective HSP length: 72
effective length of query: 204
effective length of database: 2,002,190
effective search space: 408446760
effective search space used: 408446760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)