GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000914-TA|BGIBMGA000914-PA|undefined
         (276 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763...    29   5.4  
08_01_0758 - 7193287-7193871,7193965-7194421,7194437-7194655,719...    29   5.4  
08_01_0757 - 7164380-7164490,7164585-7165041,7165057-7165275,716...    29   5.4  
01_05_0138 + 18516689-18518161                                         28   7.1  

>08_02_0546 -
           18474217-18475133,18475207-18475396,18475870-18476313,
           18476629-18477495,18478858-18479367
          Length = 975

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 116 SGAPLHKVPDEWQLLWLGPDAPDAYIKELCHRVRSALERFETLTDEMPKEV 166
           SG P+  VP  W      P  P+  ++ LC+R   A  +F      +PK++
Sbjct: 930 SGFPMPPVPAHWS-----PSNPNTILRVLCYRNDEAATKFLKKAYNLPKKL 975


>08_01_0758 -
           7193287-7193871,7193965-7194421,7194437-7194655,
           7194881-7195419
          Length = 599

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 164 KEVD-LRSFLRPSRVVWALLVRAAEGRNCSVDTLMLAAKWNCPEGKFMIAD 213
           K VD LR F+ P  +    L+   EG+ C+ D+      WN  + K MI +
Sbjct: 338 KHVDKLRLFVMPPWLPLVCLLEVREGKCCTTDSAASIIPWN-EQKKMMITE 387


>08_01_0757 -
           7164380-7164490,7164585-7165041,7165057-7165275,
           7165501-7165757
          Length = 347

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 164 KEVD-LRSFLRPSRVVWALLVRAAEGRNCSVDTLMLAAKWNCPEGKFMIAD 213
           K VD LR F+ P  +    L+   EG+ C+ D+      WN  + K MI +
Sbjct: 244 KHVDKLRLFVMPPWLPLVCLLEVREGKCCTTDSAASIIPWN-EQKKMMITE 293


>01_05_0138 + 18516689-18518161
          Length = 490

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 135 DAPDAYIKELCHRVRSALERFETLTDEMPKEVDLRSFLRPSRVVWALLVR 184
           D PD  + E+CHR      R ET+   + +  D+  +L  SR    ++VR
Sbjct: 232 DLPDGRV-EICHRSFFMPMRIETVMPHLRESADMSRYLVVSRNKLLMVVR 280


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,321,123
Number of Sequences: 37544
Number of extensions: 264429
Number of successful extensions: 494
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 4
length of query: 276
length of database: 14,793,348
effective HSP length: 81
effective length of query: 195
effective length of database: 11,752,284
effective search space: 2291695380
effective search space used: 2291695380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)