GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000914-TA|BGIBMGA000914-PA|undefined
         (276 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_22802| Best HMM Match : Dynein_heavy (HMM E-Value=0.0034)           29   4.2  
SB_22801| Best HMM Match : Dynein_heavy (HMM E-Value=1.5e-14)          29   4.2  
SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)                   29   5.5  
SB_42331| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-07)                 28   9.6  

>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/77 (24%), Positives = 35/77 (45%)

Query: 160  DEMPKEVDLRSFLRPSRVVWALLVRAAEGRNCSVDTLMLAAKWNCPEGKFMIADFPPWSR 219
            DE P+  +L+  +      W+ LVR A G+   +     +A+    E    IA F  W +
Sbjct: 3579 DEGPQREELQKEVDKLHEAWSTLVRKARGKRRKLQRRGSSAEKKQMEIMAQIAQFKIWMQ 3638

Query: 220  HWHEDSSLLAEGVLEVP 236
            ++  D  + ++ V  +P
Sbjct: 3639 NFSTDFLIDSDSVDNIP 3655


>SB_22802| Best HMM Match : Dynein_heavy (HMM E-Value=0.0034)
          Length = 504

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 122 KVPDEWQLLWLGPDAPDAYIKELCHR---VRSALERFETLTDEMPKEVDLRSFLRPSRVV 178
           +VP EW  +W GP  P  +++ L  +   + S +ER E  T  +   +DL     P   +
Sbjct: 433 EVPQEWTSIWEGPMDPVHWLRALVSKTLALGSWVERSEART-LLKDTLDLSELFHPGTFL 491

Query: 179 WALLVRAA 186
            AL  + A
Sbjct: 492 NALRQQTA 499


>SB_22801| Best HMM Match : Dynein_heavy (HMM E-Value=1.5e-14)
          Length = 478

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 122 KVPDEWQLLWLGPDAPDAYIKELCHR---VRSALERFETLTDEMPKEVDLRSFLRPSRVV 178
           +VP EW  +W GP  P  +++ L  +   + S +ER E  T  +   +DL     P   +
Sbjct: 370 EVPQEWTSIWEGPMDPVHWLRALVSKTLALGSWVERSEART-LLKDTLDLSELFHPGTFL 428

Query: 179 WALLVRAA 186
            AL  + A
Sbjct: 429 NALRQQTA 436


>SB_34804| Best HMM Match : rve (HMM E-Value=1.2e-24)
          Length = 1725

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 121 HKVPD-EWQLLWLGPDAPDAYIKE 143
           HK+PD +W   W   D PDA I +
Sbjct: 732 HKIPDPDWYASWASKDDPDALIPQ 755


>SB_42331| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-07)
          Length = 403

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 3   ILSEDRDIPALLCNACINVILENIFI-LLNTNVFLDAELNTTV 44
           +  E+  +    CN C+NV+   +F+ +   N+F+   L  TV
Sbjct: 312 VKQENERVSRFYCNDCVNVLGVTVFVFVFGVNMFIVNVLGVTV 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,058,565
Number of Sequences: 59808
Number of extensions: 271591
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 5
length of query: 276
length of database: 16,821,457
effective HSP length: 81
effective length of query: 195
effective length of database: 11,977,009
effective search space: 2335516755
effective search space used: 2335516755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)