GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000914-TA|BGIBMGA000914-PA|undefined
         (276 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    44   2e-04
AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signali...    29   2.7  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    28   8.4  

>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 122  KVPDEWQLLWLGPDAPDAYIKELCHRVRSALERFETLTDE--MPKEVDLRSFLRPSRVVW 179
            + PDEW  +W GP  P  Y+  +  + R  L+ FE+      +   +D      P+  + 
Sbjct: 3992 QTPDEWDSMWAGPSDPADYLNVVVKKTRGTLQLFESSKSSSLLSSPIDFSDLFYPNIFLN 4051

Query: 180  ALLVRAAEGRNCSVDTLMLAAKW 202
            AL    +      +D L+L++ W
Sbjct: 4052 ALRQTTSRQIKIPLDQLILSSAW 4074



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 223  EDSSLLAEGVLEVPVYSNESREELVFEMRVPLARSFSAETATLHTVAMFI 272
            E SS +    ++VPVYS+  R +L+  + +P      A+   +  VA+F+
Sbjct: 4124 ESSSTITGEQIQVPVYSSSERSDLICSVNMPCR---GADQWNIAAVALFL 4170


>AF002197-3|AAD34660.1| 1451|Caenorhabditis elegans Notch signaling
           pathway homologprotein 1 protein.
          Length = 1451

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 131 WLGPDAPDAYIKELCHRVRSALERFETLTDEMPKEV-DLRSFLRPSRVVWALLVRAAEGR 189
           W G D     I + CHR ++ +        +  + V +L+  L  +RVV+A    A E R
Sbjct: 405 WFGQDYDGVIILDECHRAKNLVPTAGAKPTKTGRMVLELQKALPNARVVYASATGATEPR 464

Query: 190 NCSVDT 195
           N +  T
Sbjct: 465 NMAYMT 470


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 141  IKELCHRVRSALERFETLTDEMPKEVDLRSFLRPSRVVWALLVRAAEGRNCSVDTLMLAA 200
            I+E+     SAL   + L   + KE+ L S   PS++   L    A+    S  T  LAA
Sbjct: 1501 IQEMSEDDESALLEIDELHQNLEKELKLVSDKEPSKIAEKLRFLRADRDRLSSRTRKLAA 1560

Query: 201  K 201
            K
Sbjct: 1561 K 1561


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 141  IKELCHRVRSALERFETLTDEMPKEVDLRSFLRPSRVVWALLVRAAEGRNCSVDTLMLAA 200
            I+E+     SAL   + L   + KE+ L S   PS++   L    A+    S  T  LAA
Sbjct: 1501 IQEMSEDDESALLEIDELHQNLEKELKLVSDKEPSKIAEKLRFLRADRDRLSSRTRKLAA 1560

Query: 201  K 201
            K
Sbjct: 1561 K 1561


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 141  IKELCHRVRSALERFETLTDEMPKEVDLRSFLRPSRVVWALLVRAAEGRNCSVDTLMLAA 200
            I+E+     SAL   + L   + KE+ L S   PS++   L    A+    S  T  LAA
Sbjct: 1501 IQEMSEDDESALLEIDELHQNLEKELKLVSDKEPSKIAEKLRFLRADRDRLSSRTRKLAA 1560

Query: 201  K 201
            K
Sbjct: 1561 K 1561


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,015,936
Number of Sequences: 27539
Number of extensions: 210081
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 7
length of query: 276
length of database: 12,573,161
effective HSP length: 80
effective length of query: 196
effective length of database: 10,370,041
effective search space: 2032528036
effective search space used: 2032528036
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)