GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000914-TA|BGIBMGA000914-PA|undefined
         (276 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.9  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    21   9.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 241 ESREELVFEMRVPLARSFSAETATLHTVAMFIGPV 275
           E REE   + R+  A    A T  +H  A  +GPV
Sbjct: 593 EEREEFRRQERMRYAAPHKAFTYRMHGYASVVGPV 627


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 4  LSEDRDIPALLCNACINVILENIFILLNTNVF----LDAELNTTVSPME 48
          L ED     L    CI   L +   L+N NVF     D  LN T   M+
Sbjct: 41 LLEDESERMLRKRGCIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMD 89


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
          protein.
          Length = 90

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 8  RDIPALLCNACINVILENIFILLNTNVF 35
          RD+  L   AC +  +E + +L  + +F
Sbjct: 39 RDLQPLFKLACTDTFMEGVIVLAFSGLF 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,706
Number of Sequences: 429
Number of extensions: 2414
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 276
length of database: 140,377
effective HSP length: 57
effective length of query: 219
effective length of database: 115,924
effective search space: 25387356
effective search space used: 25387356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)