BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000914-TA|BGIBMGA000914-PA|undefined (276 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g29385.1 68416.m03692 hypothetical protein 29 2.6 At2g01130.1 68415.m00021 helicase domain-containing protein simi... 29 4.5 At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 28 7.9 >At3g29385.1 68416.m03692 hypothetical protein Length = 218 Score = 29.5 bits (63), Expect = 2.6 Identities = 11/34 (32%), Positives = 20/34 (58%) Query: 143 ELCHRVRSALERFETLTDEMPKEVDLRSFLRPSR 176 ELCH +R A + + T+ + ++VD + PS+ Sbjct: 28 ELCHNIRIAEQEWNLATNTLSEKVDTNEAISPSK 61 >At2g01130.1 68415.m00021 helicase domain-containing protein similar to DEIH-box RNA/DNA helicase [Arabidopsis thaliana] GI:5881579; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain Length = 1112 Score = 28.7 bits (61), Expect = 4.5 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 205 PEGKFMIADFPPWSRHWHEDSSLLAEGVLEVPVYSNESREELVFEMRVPLARSFSAETAT 264 PEG F AD W++ + S+L + L+ V S E ++ F+ LA + + Sbjct: 47 PEGTFHCADLDDWNKRF----SMLLKDSLKQEVISREKKDRRDFDKLAALATTLGLYSHA 102 Query: 265 LHTVAMF 271 V +F Sbjct: 103 YAKVVVF 109 >At1g79350.1 68414.m09247 DNA-binding protein, putative contains Pfam PF00628: PHD-finger domain; contains TIGRFAMS TIGR01053: zinc finger domain, LSD1 subclass; contains Pfam PF00271: Helicase conserved C-terminal domain; similar to WSSV086 (GI:19481678)[shrimp white spot syndrome virus]; similar to nuclear protein Np95 (GI:17939938) [Mus musculus] Length = 1299 Score = 27.9 bits (59), Expect = 7.9 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 131 WLGPDAPDAYIKELCHRVRSALERFETLTDEMPKE-VDLRSFLRPSRVVWALLVRAAEGR 189 W GP+ I + CH+ ++ + + + + VD++ + +RV++ A+E R Sbjct: 378 WCGPEFDGLLIFDECHKAKNLVPEAGSQPTRIGQAVVDIQDKIPQARVIYCSATGASEPR 437 Query: 190 N 190 N Sbjct: 438 N 438 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.321 0.135 0.430 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,817,407 Number of Sequences: 28952 Number of extensions: 205381 Number of successful extensions: 407 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 406 Number of HSP's gapped (non-prelim): 3 length of query: 276 length of database: 12,070,560 effective HSP length: 80 effective length of query: 196 effective length of database: 9,754,400 effective search space: 1911862400 effective search space used: 1911862400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.9 bits) S2: 59 (27.9 bits)
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