GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000913-TA|BGIBMGA000913-PA|undefined
         (1383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    36   0.030
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    33   0.21 
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    31   1.1  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    30   2.6  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    29   4.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    29   4.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    28   7.9  
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p...    28   7.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 2/212 (0%)

Query: 954  LSLLHFTARLDGLTDQLVHYALQQQNPDMNEKLKEIKIQKATYQKQQHELQENLLRDL-S 1012
            +++++FT  +  L  Q++   +  Q P + ++       K + ++Q   LQE LL+ L S
Sbjct: 3610 MNVVNFTLSISLLETQMLKSVISVQEPGVFKQKDNCFTLKLSIERQIRSLQEQLLKTLCS 3669

Query: 1013 GNVDILHDANLLASLNRTRAANAAIREALDGARALEAQSXXXXXXXXXXXXXXXXXXXXX 1072
             N +I+    ++  L   +  +  IR A   ++++  +                      
Sbjct: 3670 SNENIVGTDEIVVLLKNLKEKHETIRLAYSESQSINRKVDELIRRYKLSIKSFLSVVVVF 3729

Query: 1073 XXXXXXXXXXXLPVDAVLEMFADALRTLGQKSQPKTDDVIKYVTRRIIERVLLGLYKKDN 1132
                          + +   F   L  + +        +I    R +I R  L ++ +D 
Sbjct: 3730 QHFISLKKSYSFSFNFIWSTFHQMLNVVLENRNQDFKSLIMDALRDLIRRCFLYIFPEDR 3789

Query: 1133 YIIVLHLLKEVYDELMPDKLWNLLVSSNDVLE 1164
             ++ L LL   +     + L  LL+ +   LE
Sbjct: 3790 -VLFLFLLMFFFFPKETESLRKLLIVNGKTLE 3820



 Score = 32.7 bits (71), Expect = 0.37
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 553  VRSLRAPPDVVRDVLEGVLRLMGIADTSWHSMKNFLAK 590
            +RSL  PP  +R  +E V +L+G + T W +++  L +
Sbjct: 3221 LRSLSRPPMAIRITMEVVCKLLGFSATDWKNVQQLLKR 3258


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 65/269 (24%), Positives = 104/269 (38%), Gaps = 25/269 (9%)

Query: 320 DNPSQFNGQ-FKNALSSSGDATHTLVVLSES--------AANSATIACIEALIRA-RSLN 369
           D+ S  N Q   N   + G+ + TL  +  S        +  SA  A  EA  R+  S++
Sbjct: 499 DDQSSLNSQQLSNQAKAQGEVSPTLSFVPSSHSMEQGNGSVASANNAQSEAATRSINSIS 558

Query: 370 AIPEHMLPGANNPHMLDNIKQCLGIVICLDKNQSNLAELIEKYPILYNQADLIWLEKWSE 429
            + E   P  ++   +D  K   G +  +      L  L+EKY  L  Q  + W +    
Sbjct: 559 EVSEVRFPEQSSVKTVDERKSLDGRITSV-----TLETLVEKYSELSKQQIVEWFKSKLY 613

Query: 430 ETLRDVPSLIIDRLLKENVTDITKD------QLEKIPIDGFVKIHKSLETDCMRAPCRYV 483
           E LRD  S I     K  V +  K+       LEK+P+    K+     +   +   +  
Sbjct: 614 EILRDSASKIDSLTEKLKVANAEKNAALCEAALEKVPLAKHNKLSDGTFSTPDKENVQST 673

Query: 484 NFVKTYFYIMSRKKTALVQRQNTLSAGLD-ALKRARTEVATLQTNASKQEAELSDKQAKA 542
           N         S  K   V R+   S+ LD  LK A      L    S  + EL +++ + 
Sbjct: 674 NDAHIMQENFSLHKALEVMRET--SSDLDKQLKDATASQKELIVQTSSFQKELVEERERH 731

Query: 543 NQALDQISATVRSLRAPPDVVRDVLEGVL 571
           N A+ +    + SL    +++   LE  L
Sbjct: 732 N-AISKRLQEIESLYRDRELLVTNLEDQL 759


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 851 VLEAQKCGLTPFLIDPDGEGMTWLKNTLADQQCDFVSQNS 890
           +L+    G+  F    DG+   WL +TL DQ   F + NS
Sbjct: 123 ILKFSNDGMVLFTASNDGDVFAWLISTLVDQNSTFETSNS 162


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/95 (22%), Positives = 41/95 (43%)

Query: 821 LSTTEKQLKWDADGLPADSSAVKNAVLIDQVLEAQKCGLTPFLIDPDGEGMTWLKNTLAD 880
           L+   + L+ D+    A   + K  V + +  EA++C     L+ P+   +  L   L  
Sbjct: 122 LNDCAQVLQRDSTHAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSKELQK 181

Query: 881 QQCDFVSQNSEKLSTAVQYAIRLGLIVVITEAEHV 915
           +  DF  + SEK   A +  I    +++  +  H+
Sbjct: 182 KSDDFEKRESEKKRVAQEKVIAAKTVLLALQERHI 216


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 734

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 1087 DAVLEMFADALRTLGQKSQPKTDDVIKYVTRRIIER 1122
            D   E+ A  +R + QK + K DD+++YV   + +R
Sbjct: 666  DRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDR 701


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 10/92 (10%)

Query: 512 DALKRA---RTEVATLQTNASKQEAELSDKQAKANQALDQISATVRSLRAPPDVVRDVLE 568
           ++LKR    R++V  L    + + A L D+  K+ +  +Q   T+R L +  D++   + 
Sbjct: 227 ESLKRISCIRSKVEELDQEIT-ETARLQDELFKSTEEYEQQMITIRHLESQSDIINTTIN 285

Query: 569 GVLRLMGIADTSWHSMK----NFLAKRGVKED 596
            +   M I D S   ++    NF  K  VKE+
Sbjct: 286 DLKSQMTITDESSEDLEKLHSNFAEK--VKEE 315


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 9/17 (52%), Positives = 15/17 (88%)

Query: 830 WDADGLPADSSAVKNAV 846
           WDA GLPA+++A++N +
Sbjct: 104 WDAFGLPAENAAIENGI 120


>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 170 ENVKWYNPKNTEDLLTAIVSEANFIFRDRFVTDEEKLRFSTMCRGHLKN 218
           ++V W      E L+     + + I R++F  DEE  RF    R H ++
Sbjct: 300 KDVDWRTHTAFEQLVYHAYQDRHVINREQFFADEEAKRFKDSFRKHFRD 348


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,215,017
Number of Sequences: 5004
Number of extensions: 200728
Number of successful extensions: 690
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 17
length of query: 1383
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1301
effective length of database: 1,952,150
effective search space: 2539747150
effective search space used: 2539747150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)