Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000913-TA|BGIBMGA000913-PA|undefined
(1383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 40 0.019
04_04_1657 - 35102751-35102868,35102987-35103504,35104065-351042... 33 2.1
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 32 2.8
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 31 6.5
02_02_0009 + 6068260-6068591,6068797-6068917,6069034-6069122,606... 31 6.5
08_02_0994 - 23395808-23396920 31 8.6
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87... 31 8.6
>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 39.5 bits (88), Expect = 0.019
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 362 LIRARSLNAIPEHMLPGANNPHMLDNIKQCLGIVICLDKNQSNLAELIEKYPILYNQADL 421
L+++ S + + H +PG + DN+ V + + + ELI +Y ++ Q+ +
Sbjct: 1028 LLQSPSYDELTNHKIPGTRK--IQDNLSDLHAQVAANQRGITLIKELINQYGLITVQSYM 1085
Query: 422 IWLEKWSEETLRDVPSLIIDRLLKENVTDITKDQLEKIPIDGFVKIHKSLETDCMRAPCR 481
++ +EE +R++ ++ R+ KEN + + +D E DG V +H L D +
Sbjct: 1086 NHVQNNAEEAVREMLKVVASRVEKENGSCVIED--EDYMDDGSV-LHLKLTLDSSKGEAT 1142
Query: 482 Y 482
+
Sbjct: 1143 F 1143
>04_04_1657 -
35102751-35102868,35102987-35103504,35104065-35104211,
35104289-35106262,35106964-35107089,35107178-35107264,
35107335-35107424,35107725-35107811,35108248-35108300,
35109339-35109387
Length = 1082
Score = 32.7 bits (71), Expect = 2.1
Identities = 14/53 (26%), Positives = 31/53 (58%)
Query: 514 LKRARTEVATLQTNASKQEAELSDKQAKANQALDQISATVRSLRAPPDVVRDV 566
+++ + EV +L+ +Q+A+L +AKA++A+ S +A DV++ +
Sbjct: 816 VQKLKEEVNSLRQQREQQDADLQKSEAKAHEAMTLASEEASKSKAAKDVIKSL 868
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 32.3 bits (70), Expect = 2.8
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 509 AGLDALKRART-EVATLQTNASKQEAELSDKQAKANQALDQISATVRSLRAPPDVVRD 565
A LD LK+ R +V Q+N ++ A+L ++A A Q+ + ++V+ ++PP V D
Sbjct: 378 AELDELKKNRYGDVRGRQSNIAESPAQLLLEEASAKQSASKKVSSVQQFQSPPKVSTD 435
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 31.1 bits (67), Expect = 6.5
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
Query: 503 RQNTLSAGLDALKRARTEVATLQTNASKQEAELSDKQAKANQALDQI-----SATVRSLR 557
R + LS L+ K RT + A ++EAELS+K + N+ ++ AT++ L
Sbjct: 854 RVDELSGELEEYKEKRTSLEASLLEAKQKEAELSEKLDQVNEEKEKFEELSKKATIKHLE 913
Query: 558 APPDVVRDVLEGVLRLMGIADTSWHSMKNFLAKRGVKEDIRCLDASQISPAAIEGVKKLL 617
A V L+G L A +++ L G++E LD + + +E K L
Sbjct: 914 AENQV--QALQGELE---SARHKLEEVESDLEALGIRE-TSVLDKLKSAEEQLEHKGKAL 967
Query: 618 E 618
E
Sbjct: 968 E 968
>02_02_0009 +
6068260-6068591,6068797-6068917,6069034-6069122,
6069207-6069291,6069421-6069580,6069667-6069743,
6069848-6069898,6069979-6070069,6070167-6070468,
6070549-6070830,6070911-6071388,6071457-6071560,
6071647-6071809,6071895-6072017,6072099-6072217,
6072304-6072636,6072713-6073003,6073088-6073171,
6073260-6073393,6073478-6073705,6073795-6073966,
6074062-6074316,6074408-6074668
Length = 1444
Score = 31.1 bits (67), Expect = 6.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 392 LGIVICLDKNQSNLAELIEKYPILYNQADLIWLEKWS 428
LG+V L + LA I K PI Y Q DL++ W+
Sbjct: 564 LGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWA 600
>08_02_0994 - 23395808-23396920
Length = 370
Score = 30.7 bits (66), Expect = 8.6
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 17 VQHNVA-RSGGGGAVHSGARTTLYVRGLQRARADAWGSCPVHS 58
+ HNVA R+GG G +H GA +RG+ WG PV S
Sbjct: 207 IAHNVAMRAGGEGGLHGGAA----IRGVALLDPYFWGKRPVPS 245
>02_01_0119 -
876317-876610,876937-877099,877222-877302,877508-877570,
878246-878355
Length = 236
Score = 30.7 bits (66), Expect = 8.6
Identities = 16/70 (22%), Positives = 40/70 (57%)
Query: 496 KKTALVQRQNTLSAGLDALKRARTEVATLQTNASKQEAELSDKQAKANQALDQISATVRS 555
++ L R LS+ ++ K+A+ + A + ++A++ AEL + K ++ +++ T++
Sbjct: 78 RRDRLNDRFLELSSVINPDKQAKLDKANILSDAARLLAELRGEAEKLKESNEKLRETIKD 137
Query: 556 LRAPPDVVRD 565
L+ + +RD
Sbjct: 138 LKVEKNELRD 147
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,077,058
Number of Sequences: 37544
Number of extensions: 1245809
Number of successful extensions: 3436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3423
Number of HSP's gapped (non-prelim): 16
length of query: 1383
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1292
effective length of database: 11,376,844
effective search space: 14698882448
effective search space used: 14698882448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)
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