GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000913-TA|BGIBMGA000913-PA|undefined
         (1383 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.20 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    26   1.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   7.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   7.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   9.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 29.5 bits (63), Expect = 0.20
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 960  TARLDGLTDQLVHYAL-QQQNPDMNEKLKEIKIQKATYQKQQHELQE 1005
            T+R+ GL +Q  + A+ QQQ     ++ ++ + Q+   Q+QQH+ +E
Sbjct: 1192 TSRIRGLQEQQRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQARE 1238


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated ion
            channel subunit protein.
          Length = 469

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 1342 EDTRTLDSDITSVYLITVHSTHGHI----VKNEEDRRCN 1376
            ++T T D D +S   +TVHS    +    VK +ED++C+
Sbjct: 366  DNTNTNDQDYSSQNYLTVHSFPSTLNIPSVKIDEDQKCS 404


>AY739658-1|AAU85297.1|  664|Apis mellifera
            hyperpolarization-activated ion channelvariant L protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 7.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 1093 FADALRTLGQKSQPKTDDVIKYVTRRIIERVLLGLYKKDNYI--IVLHLLKEVY 1144
            F D    LG+ S+   +DVI Y  R ++  V        N++  +V  L  EV+
Sbjct: 424  FFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVF 477


>AY280848-1|AAQ16312.1|  632|Apis mellifera
            hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 7.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 1093 FADALRTLGQKSQPKTDDVIKYVTRRIIERVLLGLYKKDNYI--IVLHLLKEVY 1144
            F D    LG+ S+   +DVI Y  R ++  V        N++  +V  L  EV+
Sbjct: 392  FFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVF 445


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 270 EVCDELNVLCPAMARAANG 288
           +VC +L  LCP+MA    G
Sbjct: 350 DVCSKLKGLCPSMANYDRG 368


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 270 EVCDELNVLCPAMARAANG 288
           +VC +L  LCP+MA    G
Sbjct: 440 DVCSKLKGLCPSMANYDRG 458


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 317,845
Number of Sequences: 429
Number of extensions: 12236
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 6
length of query: 1383
length of database: 140,377
effective HSP length: 66
effective length of query: 1317
effective length of database: 112,063
effective search space: 147586971
effective search space used: 147586971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)