Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000913-TA|BGIBMGA000913-PA|undefined
(1383 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22610.1 68415.m02680 kinesin motor protein-related 37 0.11
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 33 1.8
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 33 1.8
At5g11390.1 68418.m01329 expressed protein 33 1.8
At2g16365.2 68415.m06033 F-box family protein contains Pfam:PF00... 31 4.1
At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00... 31 4.1
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 31 4.1
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP... 31 5.4
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP... 31 5.4
At1g11700.1 68414.m01343 expressed protein contains Pfam profile... 31 5.4
At1g79120.1 68414.m09226 hypothetical protein 31 7.1
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 30 9.4
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 30 9.4
>At2g22610.1 68415.m02680 kinesin motor protein-related
Length = 1093
Score = 36.7 bits (81), Expect = 0.11
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 6/160 (3%)
Query: 399 DKNQSNLAELIEKYPILYNQADLIWLEKWS-EETLRDVPSLIIDRLLKENVTDITKDQLE 457
DK + +AEL E+Y N+ W+ S E L V + +++ + + DQ
Sbjct: 275 DKYEKKIAELSERYEHKTNECHEAWMSLTSANEQLEKVMMELNNKIYQAR----SLDQTV 330
Query: 458 KIPIDGFVKIHKSLETDCMRAPCRYVNFVKTYFYIMSRKKTALVQRQNTLSAGLDALKRA 517
D I + E D R ++ ++ IM R+++ L Q + G+ L +
Sbjct: 331 ITQADCLKSITRKYEND-KRHWATAIDSLQEKIEIMKREQSQLSQEAHECVEGIPELYKM 389
Query: 518 RTEVATLQTNASKQEAELSDKQAKANQALDQISATVRSLR 557
V L + + + S++QAK + + I T ++R
Sbjct: 390 VGGVQALVSQCEDLKQKYSEEQAKRKELYNHIQETKGNIR 429
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 32.7 bits (71), Expect = 1.8
Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 464 FVKIHKSLETDCMRAPCRYVNFVKTYFYIMSRKKTALVQRQNTLSAGLDALKRARTEVAT 523
F ++ + L+ + +Y + + + R K + + Q LDA R E A
Sbjct: 133 FSQVEQKLDQEIKERDEKYADLDAKFTRLHKRAKQRIQEIQKEKD-DLDARFREVNETAE 191
Query: 524 LQTNA-SKQEAELSDKQAKANQALDQISATVRSLRAPPDVVRDVLEGVLRLMGIADTSWH 582
++ S + EL + +AN+AL + A + LR+ + +RD +E + + +
Sbjct: 192 RASSQHSSMQQELERTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIE 251
Query: 583 SM-KNFLAKRGVKEDIR 598
++ ++ L K + ED++
Sbjct: 252 TLQQSLLDKDQILEDLK 268
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 32.7 bits (71), Expect = 1.8
Identities = 29/137 (21%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 464 FVKIHKSLETDCMRAPCRYVNFVKTYFYIMSRKKTALVQRQNTLSAGLDALKRARTEVAT 523
F ++ + L+ + +Y + + + R K + + Q LDA R E A
Sbjct: 133 FSQVEQKLDQEIKERDEKYADLDAKFTRLHKRAKQRIQEIQKEKD-DLDARFREVNETAE 191
Query: 524 LQTNA-SKQEAELSDKQAKANQALDQISATVRSLRAPPDVVRDVLEGVLRLMGIADTSWH 582
++ S + EL + +AN+AL + A + LR+ + +RD +E + + +
Sbjct: 192 RASSQHSSMQQELERTRQQANEALKAMDAERQQLRSANNKLRDTIEELRGSLQPKENKIE 251
Query: 583 SM-KNFLAKRGVKEDIR 598
++ ++ L K + ED++
Sbjct: 252 TLQQSLLDKDQILEDLK 268
>At5g11390.1 68418.m01329 expressed protein
Length = 703
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/36 (38%), Positives = 27/36 (75%)
Query: 691 IDRNLQEAEDQLSTLSSGLATVDERVAALKEQLGRH 726
+ +LQEAE++L L++ +T+ E+V++L+EQL +
Sbjct: 362 LKESLQEAEEKLILLNTENSTLSEKVSSLEEQLNEY 397
>At2g16365.2 68415.m06033 F-box family protein contains Pfam:PF00646
F-box domain
Length = 455
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 1116 TRRIIERVLLGLYKKDNYIIVLHLLKEVYDELMPDKLWNLLVSSNDVLEDTDNVNEIRRS 1175
T+ +++ L +K+N + L +LK + L P ++ SND+ + D++ +
Sbjct: 325 TKSMMKMKEASLGEKENNNLFLEILKSGINNLQPRNQEPVVSQSNDLRQGGDDITLL--- 381
Query: 1176 YPWIPDGCVRK 1186
+PWI C +K
Sbjct: 382 HPWIQRWCKKK 392
>At2g16365.1 68415.m06032 F-box family protein contains Pfam:PF00646
F-box domain
Length = 778
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 1116 TRRIIERVLLGLYKKDNYIIVLHLLKEVYDELMPDKLWNLLVSSNDVLEDTDNVNEIRRS 1175
T+ +++ L +K+N + L +LK + L P ++ SND+ + D++ +
Sbjct: 325 TKSMMKMKEASLGEKENNNLFLEILKSGINNLQPRNQEPVVSQSNDLRQGGDDITLL--- 381
Query: 1176 YPWIPDGCVRK 1186
+PWI C +K
Sbjct: 382 HPWIQRWCKKK 392
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 31.5 bits (68), Expect = 4.1
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 444 LKENVTDITKDQLEKIPIDGFVKIHKSLETDCMRA--PCRYVNFV----KTYFYIMSRKK 497
L++N+ D+T D+ EK + +HKS + D + P + ++ + K+ I + K
Sbjct: 655 LQDNMMDLTVDETEKESLKNLPSLHKSHQPDINKTLLPIKNISQISSLKKSTSSIDASKL 714
Query: 498 TALVQRQNTLSAGLDALKRARTEVATLQTNASKQEAELSDKQAKANQALDQISATVR 554
+ALV + ++ + R ++ T SK A +S + K D +S+ +R
Sbjct: 715 SALVLSERDVTVSSSNIVR---DLPTTNAEPSK-AAGMSREAEKRQNVEDPVSSGIR 767
>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 31.1 bits (67), Expect = 5.4
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 493 MSRKKTALVQ-RQNTLSAGLDALK-RARTEVATLQTNASKQEAELSDKQAKANQALDQI- 549
MS + A + R+N +DA + R R E ++ SK+E L K+ + QAL
Sbjct: 1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60
Query: 550 SATVRSLRAPPDVVRDVLEGV 570
SA+ S+ D ++D++ GV
Sbjct: 61 SASAASVDKKLDSLKDMVAGV 81
>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 31.1 bits (67), Expect = 5.4
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 493 MSRKKTALVQ-RQNTLSAGLDALK-RARTEVATLQTNASKQEAELSDKQAKANQALDQI- 549
MS + A + R+N +DA + R R E ++ SK+E L K+ + QAL
Sbjct: 1 MSLRPNAKTEVRRNRYKVAVDAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFP 60
Query: 550 SATVRSLRAPPDVVRDVLEGV 570
SA+ S+ D ++D++ GV
Sbjct: 61 SASAASVDKKLDSLKDMVAGV 81
>At1g11700.1 68414.m01343 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 201
Score = 31.1 bits (67), Expect = 5.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 18 QHNVARSGGGGAVHSGARTTLYVRGLQRARADAW 51
Q +SGGGG+V G TL R L+R R W
Sbjct: 161 QRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIW 194
>At1g79120.1 68414.m09226 hypothetical protein
Length = 413
Score = 30.7 bits (66), Expect = 7.1
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 981 DMNEKLKEIKIQKATYQKQQHELQENLLRDLSGNVDILHDANLLASLNR 1029
D+N+K I K+ Q Q+H LLRDL +V +H NL+A++ +
Sbjct: 73 DLNKKPSLILQLKSIIQAQKHG--SLLLRDLEKHVGFVHKWNLMAAIEK 119
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 30.3 bits (65), Expect = 9.4
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 971 VHYALQQQNPDMNEKLKEIKIQKATYQKQQHELQENLLRDLSGNVDILHDANLLAS 1026
VH ++ ++ ++EK+K +++ T KQ+ EL E L NV +HD +AS
Sbjct: 922 VHESILEEINGLSEKIKGRELELETLGKQRSELDEELRTKKEENVQ-MHDKINVAS 976
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein contains
Pfam PF00232 : Glycosyl hydrolase family 1 domain;
TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar
to Cyanogenic Beta-Glucosidase (GI:1311386)(pdb:1CBG)
[Trifolium Repens]; identical beta-glucosidase
GI:10834547
Length = 577
Score = 30.3 bits (65), Expect = 9.4
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 1312 WLISSREYVAMLRAYFLSGENASAAVRMYREDTRTLDSDITSVYLITVHSTHGHIVKNEE 1371
W + Y+ + Y + A + E + DS T Y+++ H+ H EE
Sbjct: 189 WTTINEPYIMTVAGYDQGNKAAGRCSKWVNEKCQAGDSS-TEPYIVSHHTLLAHAAAVEE 247
Query: 1372 DRRCNK 1377
R+C K
Sbjct: 248 FRKCEK 253
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,688,166
Number of Sequences: 28952
Number of extensions: 1010547
Number of successful extensions: 2815
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2809
Number of HSP's gapped (non-prelim): 17
length of query: 1383
length of database: 12,070,560
effective HSP length: 90
effective length of query: 1293
effective length of database: 9,464,880
effective search space: 12238089840
effective search space used: 12238089840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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