Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000912-TA|BGIBMGA000912-PA|IPR011704|ATPase associated
with various cellular activities, AAA-5
         (255 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (ME...    32   0.44 
At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase f...    28   5.4  
At2g17530.1 68415.m02028 protein kinase family protein identical...    28   7.1  
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu...    27   9.4  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    27   9.4  
At1g33530.1 68414.m04149 F-box family protein contains F-box dom...    27   9.4  
At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi...    27   9.4  

>At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (METII)
            nearly identical to cytosine-5 methyltransferase (METII)
            [Arabidopsis thaliana] GI:6523846
          Length = 1519

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 16/61 (26%), Positives = 26/61 (42%)

Query: 29   GVISATALEISNQPPDVWSWVVCDGDIDPEWIESLNSVLDDNRLLTLPSGWRVQFGNNVN 88
            G++ A    +S     V  W     ++ PEW E ++   +    ++LP G R   G N  
Sbjct: 1254 GILEAGTYGVSQPRKRVIIWAASPEEVLPEWPEPMHVFDNPGSKISLPRGLRYDAGCNTK 1313

Query: 89   F 89
            F
Sbjct: 1314 F 1314


>At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 331

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 38  ISNQPPDVWSWVVCDGDIDPEWIESLNSVLDDNRLLTLPSGWRVQFGNNVNFIFETHSLE 97
           I N+   +W+  V   ++  ++++  N  L DN  + L    R+   NN++    TH LE
Sbjct: 54  IQNESVSLWNISVFVSNLSMDYVQEANQSLTDNESVPLQDILRIFMLNNLSL---THPLE 110


>At2g17530.1 68415.m02028 protein kinase family protein identical to
           SRPK2 [Arabidopsis thaliana] gi|9843645|emb|CAC03676;
           contains protein kinase domain, Pfam:PF00069
          Length = 440

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 131 HRHQGAALTKLYNVAVVRQILTQFEYLVQTANAISTQPGPEEMVICAIQRSVVDLLKEAA 190
           +R++G  L+K+  +   + ILT  +YL +    I +   PE +++C+      D ++   
Sbjct: 135 NRYKGMELSKVREIC--KCILTGLDYLHRELGMIHSDLKPENILLCSTIDPAKDPIRSGL 192

Query: 191 VP 192
            P
Sbjct: 193 TP 194


>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
            putative strong similarity to cytosine-5
            methyltransferase (METII) [Arabidopsis thaliana]
            GI:6523846; contains Pfam profiles PF01426: BAH domain,
            PF00145: C-5 cytosine-specific DNA methylase
          Length = 1512

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 29   GVISATALEISNQPPDVWSWVVCDGDIDPEWIESLNSVLDDNRLLTLPSGWRVQFGNNVN 88
            G++ A    +S     V  W     ++ PEW E ++   +    ++LP G       N  
Sbjct: 1247 GILEAGTYGVSQPRKRVIIWAASPEEVLPEWPEPMHVFDNPGSKISLPRGLHYDTVRNTK 1306

Query: 89   F 89
            F
Sbjct: 1307 F 1307


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)

Query: 48   WVVCDG-DIDP-EWIESLNSVLDDNRLLTLP 76
            W+V D  ++ P + +E+LN +LDDNR L +P
Sbjct: 1142 WIVLDELNLAPSDVLEALNRLLDDNRELFVP 1172


>At1g33530.1 68414.m04149 F-box family protein contains F-box domain
           Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
           interaction domain
          Length = 441

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 43  PDVWSWVVCDGDIDPEWIESLNSVLDDNRLLTLPSGWRVQFGNNVNFIFETHSL 96
           P   + +VC  ++D  +I  LN +    R LT P G ++  G  ++ +  T+ +
Sbjct: 187 PGSCNGLVCVYELDSVYIYLLNPMTGVTRTLTPPRGTKLSVGFGIDVVTGTYKV 240


>At1g03560.1 68414.m00337 pentatricopeptide (PPR)
          repeat-containing protein contains Pfam profile
          PF01535: PPR repeat
          Length = 660

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 48 WVVCDGDIDP-EWIESLNSVLD---DNRLLTLPSGWRVQFGN 85
          WV     + P EWIE  N V D    NR L LPS W  Q  N
Sbjct: 51 WVFNSSSLPPPEWIEPFNDVSDLVKSNRNL-LPSPWVSQILN 91


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,629,381
Number of Sequences: 28952
Number of extensions: 209702
Number of successful extensions: 426
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 7
length of query: 255
length of database: 12,070,560
effective HSP length: 79
effective length of query: 176
effective length of database: 9,783,352
effective search space: 1721869952
effective search space used: 1721869952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)