GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000912-TA|BGIBMGA000912-PA|IPR011704|ATPase associated
with various cellular activities, AAA-5
         (255 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    26   0.32 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   3.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   9.2  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   9.2  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   9.2  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
          protein.
          Length = 46

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query: 5  ISPKAMSRDWLL-GHIDPDT 23
          I PKA SR WLL GHI   T
Sbjct: 12 ICPKAFSRPWLLQGHIRTHT 31


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 90  IFETHSLEHASPATISRMGIIL 111
           I+  HS  HA+ +  +R GI L
Sbjct: 283 IYTAHSTRHAATSAAARKGISL 304


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 24  RQWTDGVISATALEISNQPPDVWSWVVCDGD 54
           +Q+ +   SA    +S  P + + W+   GD
Sbjct: 147 QQYDNNNFSAEENSVSEPPANFYPWMKAHGD 177


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 24  RQWTDGVISATALEISNQPPDVWSWVVCDGD 54
           +Q+ +   SA    +S  P + + W+   GD
Sbjct: 147 QQYDNNNFSAEENSVSEPPANFYPWMKAHGD 177


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/31 (25%), Positives = 15/31 (48%)

Query: 24  RQWTDGVISATALEISNQPPDVWSWVVCDGD 54
           +Q+ +   SA    +S  P + + W+   GD
Sbjct: 147 QQYDNNNFSAEENSVSEPPANFYPWMKAHGD 177


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,909
Number of Sequences: 317
Number of extensions: 1986
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 255
length of database: 114,650
effective HSP length: 55
effective length of query: 200
effective length of database: 97,215
effective search space: 19443000
effective search space used: 19443000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)