Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000912-TA|BGIBMGA000912-PA|IPR011704|ATPase associated
with various cellular activities, AAA-5
(255 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 94 2e-20
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 31 0.22
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.5
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 27 2.7
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 26 4.6
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 6.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.1
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 8.1
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.1
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 8.1
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 94.3 bits (224), Expect = 2e-20
Identities = 46/111 (41%), Positives = 69/111 (62%)
Query: 3 YVISPKAMSRDWLLGHIDPDTRQWTDGVISATALEISNQPPDVWSWVVCDGDIDPEWIES 62
YVISPKA++++ L G ++ DTR+WTDGV + + + V D ++ PEW+E+
Sbjct: 2201 YVISPKALTKESLFGSMNMDTREWTDGVFTKLLRKTRDSCYYKRYMFVFDDELSPEWVEA 2260
Query: 63 LNSVLDDNRLLTLPSGWRVQFGNNVNFIFETHSLEHASPATISRMGIILMS 113
+NS+LDDN+ LTL +G R+ V FE S+ + ATISR G+I +S
Sbjct: 2261 MNSLLDDNKTLTLSNGERIALQPYVKIFFEADSVASLTRATISRCGLICIS 2311
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 4 VISPKAMSRDWLLGHIDPDTRQWTDGVISATALEISNQPPDVW-SWVVCDGDIDPEWIES 62
V SP + R W+L D+ Q +D +IS+ + + P +V SW D +D +ES
Sbjct: 657 VFSPNMVERLWVLAKCTRDSAQMSDSIISSLSDVLVLSPLEVLASWYAAD-LLDALLMES 715
Query: 63 LN 64
L+
Sbjct: 716 LS 717
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 48 WVVCDG-DIDP-EWIESLNSVLDDNRLLTLP 76
W+V D ++ P + +E+LN +LDDNR L +P
Sbjct: 964 WIVLDELNLAPTDVLEALNRLLDDNRELFIP 994
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 64 NSVLDDNRLLTLPSGWRVQFGNNVNFIFETHSLEHASPATI 104
N +L D R+L +G++V N NFI ++E SP +
Sbjct: 47 NQLLSDERVLF--AGYKVPHPLNHNFILRVQTVEDCSPKQV 85
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 14 WLLGHIDPDTRQW 26
WLLGHI P QW
Sbjct: 277 WLLGHIPPTRGQW 289
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 63 LNSVLDDNRLLTLPSGWRVQFGNNVNFIFETHSL 96
+N+V+D NR+L L G V+F + + SL
Sbjct: 1419 INTVMDSNRILVLDHGKVVEFDSTKKLLENKASL 1452
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 27 TDGVISATALEISNQPPDVWSWVVCDGDIDPEWIESLNSVLDDNRLL 73
++G +++AL ++ + P SW++ G + I +NSV + LL
Sbjct: 90 SEGSTASSALPLTPRSPSNASWLLVRGGLLDSPILDINSVTQKSNLL 136
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 57 PEWIESLNSVLDDNRLLTLPSGWRVQFGNNVNFIF 91
P + +S+NSV D+ + LP+G +F +N+N ++
Sbjct: 36 PSFNDSVNSVNDEFQTYQLPNG---EFSDNMNDLY 67
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.1
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 133 HQGAALTKLYNVAVVRQILTQFEYLVQTANAISTQPGPEEMVICAIQRSVVDLLKEAAVP 192
H+G + + +A Q+L +YL + I T PE ++IC Q ++ + A
Sbjct: 182 HRGVPVGIVKQIAY--QLLIALDYLHRECGIIHTDLKPENVLICIDQDALQHIEAPATTS 239
Query: 193 SFYDEISS 200
S SS
Sbjct: 240 SPTSNTSS 247
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 19 IDPDTRQWTDGVISATALEISNQPPDVWS 47
IDPD QW D + ++ + S+ D WS
Sbjct: 282 IDPDWHQWPDDLRDVSSPKESDGLNDSWS 310
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.133 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,079,003
Number of Sequences: 5004
Number of extensions: 40292
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 12
length of query: 255
length of database: 2,362,478
effective HSP length: 71
effective length of query: 184
effective length of database: 2,007,194
effective search space: 369323696
effective search space used: 369323696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -