GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000912-TA|BGIBMGA000912-PA|IPR011704|ATPase associated
with various cellular activities, AAA-5
         (255 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573...    31   0.91 
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838...    28   6.4  
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421...    28   6.4  
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    28   8.5  

>03_06_0311 + 33054022-33054118,33056109-33056353,33057058-33057398,
            33057488-33057538,33057623-33057695,33058229-33058333,
            33060124-33060206,33061209-33061249,33061659-33063120,
            33063368-33064847,33064958-33065122,33065232-33065424,
            33065502-33065613,33065702-33065849,33065951-33066148,
            33066234-33066512,33066612-33066773,33066872-33067090,
            33067481-33067612
          Length = 1861

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 29   GVISATALEISNQPPDVWSWVVCDGDIDPEWIESLNSVLDDNRLLTLPSG 78
            G++ A A  ++      + W    G+  PEW E ++        +TLP G
Sbjct: 1602 GILEAGAYGVAQSRKRAFIWAAAPGETLPEWPEPMHVFASPELKITLPDG 1651


>10_08_0532 +
           18580579-18580746,18581923-18581997,18582659-18583887,
           18584853-18585013,18585272-18585279,18587737-18588768
          Length = 890

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 122 AVAGTVQWLHRHQGAALTKLYNVAVVRQILTQFEYLVQTANAISTQPGPEEMVICAIQRS 181
           AV   VQ + +  GA+ T     A+ +++    E LV +        G  E   C   R 
Sbjct: 126 AVLEKVQEMAQQNGASATSSAEDALNKRL----EQLVNSHPVFLFMKGTPEQPRCGFSRK 181

Query: 182 VVDLLKEAAV 191
           VVD+LK+  V
Sbjct: 182 VVDVLKQEGV 191


>01_01_0568 -
           4207812-4209587,4210056-4210291,4210647-4210793,
           4211857-4212145
          Length = 815

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 5/105 (4%)

Query: 93  THSLEHASPATISRMGIILMSPALPLLQRAVAGTVQWLHRHQGAALTKLYNVA----VVR 148
           +HS   A    ++R G++L   ALPLL+   A     +       L  +Y ++     +R
Sbjct: 49  SHSAAAAGAYVLARRGVLLGVSALPLLRAREAAAAAAVATPNSGDLATVYGMSFPQGFIR 108

Query: 149 QILTQFEYL-VQTANAISTQPGPEEMVICAIQRSVVDLLKEAAVP 192
           +    F  +  Q      T       VIC    ++VD  K+   P
Sbjct: 109 RKRVDFPRIDHQAQTCYKTFKIGRNTVICRPNEAIVDETKDIQKP 153


>04_04_1183 - 31537196-31537290,31537665-31537986,31538176-31538277,
            31538826-31539071,31539385-31539506,31539588-31540344,
            31540447-31540770,31540872-31541052,31541208-31541602,
            31541877-31541942,31542225-31542377,31542593-31542691,
            31542776-31542982,31543432-31543572,31543852-31544019,
            31544302-31544395,31544479-31544585,31545140-31545274,
            31545549-31545656,31545975-31546049,31546197-31546262,
            31546500-31546556,31546678-31546702,31546809-31546889,
            31546966-31547080,31547211-31547370,31547444-31547483,
            31547599-31547780,31547905-31548234
          Length = 1650

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 63   LNSVLDDNRLLTLPSGWRVQFGNNVNFIFETHS 95
            LN+V+D +RLL L +G  ++F +  N +   HS
Sbjct: 1462 LNTVIDCDRLLILSAGKVLEFDSPENLLSNEHS 1494


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,201,773
Number of Sequences: 37544
Number of extensions: 270723
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 4
length of query: 255
length of database: 14,793,348
effective HSP length: 80
effective length of query: 175
effective length of database: 11,789,828
effective search space: 2063219900
effective search space used: 2063219900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)