GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000912-TA|BGIBMGA000912-PA|IPR011704|ATPase associated
with various cellular activities, AAA-5
         (255 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...   157   7e-39
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...   120   8e-28
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...   120   8e-28
U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w...    29   4.3  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81073-8|CAB03030.2|  583|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score =  157 bits (381), Expect = 7e-39
 Identities = 69/108 (63%), Positives = 91/108 (84%), Gaps = 1/108 (0%)

Query: 6    SPKAMSRDWLLGHIDPDTRQWTDGVISATALEISNQPPDVWSWVVCDGDIDPEWIESLNS 65
            +PKA++R  LLG++D DTR+W+DG+I+  A E++     V  W+VCDGDIDPEW+E+LNS
Sbjct: 1951 NPKAVNRSKLLGNMDMDTREWSDGIITMAAREVTKDT-SVHHWIVCDGDIDPEWVEALNS 2009

Query: 66   VLDDNRLLTLPSGWRVQFGNNVNFIFETHSLEHASPATISRMGIILMS 113
            VLDDNRLLT+PSG R+QFG+NVNF+FET SL+ ASPAT+SRMG+I +S
Sbjct: 2010 VLDDNRLLTMPSGERIQFGSNVNFLFETDSLQFASPATVSRMGMIYIS 2057


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score =  120 bits (290), Expect = 8e-28
 Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 3/114 (2%)

Query: 3    YVISPKAMSRDWLLGHIDPDTRQWTDGVISATALEISNQ---PPDVWSWVVCDGDIDPEW 59
            +VI  KAMS+D L G +DP+TR+WTDG+ ++   +I +      D   W++ DGD+DPEW
Sbjct: 2191 HVIDAKAMSKDSLYGVMDPNTREWTDGLFTSVIRKIIDNVRGEADRRQWIIFDGDVDPEW 2250

Query: 60   IESLNSVLDDNRLLTLPSGWRVQFGNNVNFIFETHSLEHASPATISRMGIILMS 113
            +E+LNSVLDDN+LLTLP+G R+    NV  IFE   L++A+ AT+SR G++  S
Sbjct: 2251 VENLNSVLDDNKLLTLPNGERLSIPPNVRIIFEVADLKYATLATVSRCGMVWFS 2304


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score =  120 bits (290), Expect = 8e-28
 Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 3/114 (2%)

Query: 3    YVISPKAMSRDWLLGHIDPDTRQWTDGVISATALEISNQ---PPDVWSWVVCDGDIDPEW 59
            +VI  KAMS+D L G +DP+TR+WTDG+ ++   +I +      D   W++ DGD+DPEW
Sbjct: 2191 HVIDAKAMSKDSLYGVMDPNTREWTDGLFTSVIRKIIDNVRGEADRRQWIIFDGDVDPEW 2250

Query: 60   IESLNSVLDDNRLLTLPSGWRVQFGNNVNFIFETHSLEHASPATISRMGIILMS 113
            +E+LNSVLDDN+LLTLP+G R+    NV  IFE   L++A+ AT+SR G++  S
Sbjct: 2251 VENLNSVLDDNKLLTLPNGERLSIPPNVRIIFEVADLKYATLATVSRCGMVWFS 2304


>U10402-5|AAA19066.2|  650|Caenorhabditis elegans Tryptophanyl (w)
           trna synthetaseprotein 2, isoform a protein.
          Length = 650

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 84  GNNVNFIFETHSLEHASPATISRMGIILMSPALPLL 119
           G     +FE++ LE   P+  SR+  +L+  A PL+
Sbjct: 70  GEEYVHLFESNGLERTVPSIPSRISFVLLHSAFPLI 105


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical protein
            C13F10.4 protein.
          Length = 2076

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 65   SVLDDNRLLTLPSGWRVQFGNNVNFIFETHSLE 97
            ++L+D+ LL LP+ +  QF N     F  HS E
Sbjct: 1478 AMLNDSALLALPAHYSDQFLNRGGAFFNAHSAE 1510


>Z81073-8|CAB03030.2|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 16  LGHIDPDTRQWTDGVISATALEISNQPPDVWSWVVCDGD 54
           +G I  D R   +G ++    ++S   PD W+  VC  D
Sbjct: 161 MGEIFEDVRSHNEGDLATYIPQLSRVAPDSWAMSVCTID 199


>Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 16  LGHIDPDTRQWTDGVISATALEISNQPPDVWSWVVCDGD 54
           +G I  D R   +G ++    ++S   PD W+  VC  D
Sbjct: 161 MGEIFEDVRSHNEGDLATYIPQLSRVAPDSWAMSVCTID 199


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,802,689
Number of Sequences: 27539
Number of extensions: 213928
Number of successful extensions: 433
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 9
length of query: 255
length of database: 12,573,161
effective HSP length: 80
effective length of query: 175
effective length of database: 10,370,041
effective search space: 1814757175
effective search space used: 1814757175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)