GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000912-TA|BGIBMGA000912-PA|IPR011704|ATPase associated
with various cellular activities, AAA-5
         (255 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.89 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.3  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/14 (71%), Positives = 12/14 (85%)

Query: 101 PATISRMGIILMSP 114
           PA +SR+GIIL SP
Sbjct: 379 PAVLSRIGIILASP 392


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 55  IDPEWIESLNSVLDDNRLLTLPSGWRVQFGNN 86
           +D   I+++N + +D RLL  PS  R     +
Sbjct: 217 VDGFRIDAINHMFEDARLLDEPSANRTDLSKD 248


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.133    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,202
Number of Sequences: 429
Number of extensions: 2407
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 255
length of database: 140,377
effective HSP length: 56
effective length of query: 199
effective length of database: 116,353
effective search space: 23154247
effective search space used: 23154247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)