GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000911-TA|BGIBMGA000911-PA|IPR013602|Dynein heavy chain,
N-terminal region 2
         (560 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    24   3.2  
AY052623-1|AAL15471.1|  101|Tribolium castaneum kynurenine 3-mon...    24   3.2  
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    24   3.2  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    24   3.2  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    24   3.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   3.2  

>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
          3-monooxygenase protein.
          Length = 212

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 12 RNALYFQDFYFLSDDDLLELLGQ 34
          RNA   +DFY+ +  D + L+G+
Sbjct: 14 RNAAELKDFYYKTFPDAVPLIGE 36


>AY052623-1|AAL15471.1|  101|Tribolium castaneum kynurenine
          3-monooxygenase protein.
          Length = 101

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 12 RNALYFQDFYFLSDDDLLELLGQ 34
          RNA   +DFY+ +  D + L+G+
Sbjct: 29 RNAAELKDFYYKTFPDAVPLIGE 51


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 12  RNALYFQDFYFLSDDDLLELLGQ 34
           RNA   +DFY+ +  D + L+G+
Sbjct: 247 RNAAELKDFYYKTFPDAVPLIGE 269


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 12  RNALYFQDFYFLSDDDLLELLGQ 34
           RNA   +DFY+ +  D + L+G+
Sbjct: 247 RNAAELKDFYYKTFPDAVPLIGE 269


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 12  RNALYFQDFYFLSDDDLLELLGQ 34
           RNA   +DFY+ +  D + L+G+
Sbjct: 247 RNAAELKDFYYKTFPDAVPLIGE 269


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 331 NRLTSDTLAAVTHQFSSLLSAMTHRTPGTVPTASLNGK 368
           NR T   +   TH   +  S  T  TP T P +S  G+
Sbjct: 267 NRFTRHLIQRRTHTRHTTTSHNTRGTPRTTPASSRCGQ 304


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,582
Number of Sequences: 317
Number of extensions: 4042
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 560
length of database: 114,650
effective HSP length: 60
effective length of query: 500
effective length of database: 95,630
effective search space: 47815000
effective search space used: 47815000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)