GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000911-TA|BGIBMGA000911-PA|IPR013602|Dynein heavy chain,
N-terminal region 2
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...   121   3e-28
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   2.3  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    28   3.0  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    28   3.0  
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    28   3.0  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    28   3.0  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   5.2  
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    27   6.9  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score =  121 bits (291), Expect = 3e-28
 Identities = 114/458 (24%), Positives = 193/458 (42%), Gaps = 38/458 (8%)

Query: 21   YFLSDDDLLELLGQARTGSEGREVVMQSHLKKLFPGITGVRLGPGGMSVTALCSHFGEVF 80
            YFL DDDL+EL+            V+   + KL+PGI  + +     ++    ++ G   
Sbjct: 1628 YFLGDDDLMELISNPCD-----PFVINKQIIKLYPGIRSLIVDTENTNINGCTTNEGNEL 1682

Query: 81   QLDHPIDI-DCAVEV-WLKNLENEIRSSLQNM------TLKCLVTNSLHE---QDPF-SL 128
              D+PI + D    + W+ +LE  ++++L  +       ++    N       ++ F   
Sbjct: 1683 LFDNPICLLDNTQPLHWISSLEPFLKATLFQLFSTSFQQIRDFYYNKSRNVFCKEWFLRY 1742

Query: 129  PTQILCLAQNIRFTEQAERAINSKELHKFRANVEKENLYYAEAETDDENERLKRQALIL- 187
            P+QI  L+       + E  I    L     N   + +       D+    +K++  ++ 
Sbjct: 1743 PSQITLLSLRCTLCHEIETGIADCCLDAV-FNFINDGISSLVLLADENELSIKKKVTLMF 1801

Query: 188  -QCAYYLSVIKILIDNNVTSTSEWIWRKQFR-FYLLNTKE--VVARMGLAQIPYSYEYLG 243
             +  ++   + +L  N   S + + W ++ + FY  +  +  VV +M   +  Y++EY  
Sbjct: 1802 NELLHFKETVGLLCKN---SFNNYFWSREVKAFYREDHDDEAVVIKMFSLEFIYAFEY-S 1857

Query: 244  TQTGQFVRTEVADECFLILTQALHLGFVGNPFGPAGTGKTESVKAXXXXXXXXXXXFNCD 303
                  V T++   CF +L  ++     G+P GPAGTGKTE+VKA           FNCD
Sbjct: 1858 ELDDPIVYTDLTRNCFSVLLHSIASNLGGSPIGPAGTGKTETVKAVSAYLGKNVFVFNCD 1917

Query: 304  EAMDAECMGRLLTGLALSGAWGCFDEFNRLTSDTLAAVTHQFSSLLSAMTHRTPGTVPTA 363
             A + + + R+L+GLA  G + CFDEFNRL S TL+A+++    + S ++H         
Sbjct: 1918 NAFNYKTIQRILSGLAQIGTYICFDEFNRLDSGTLSAISYDIQRIQSLVSHSDGLCQSPI 1977

Query: 364  SLNGKNVSVSVWCGVAATLNPSSRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 423
             L+   + V        T+NP   GY G                                
Sbjct: 1978 LLDAPTIFV--------TMNP---GYLGRFKLPSNLKKLFRPIWMGSPDNKKICEILFLS 2026

Query: 424  XSLPHAERLAADLHDVFTLASALLSGQRHYDWGLRALK 461
                 +  L+  L   F   S  LS   HYD+GLRA+K
Sbjct: 2027 FGFKESSLLSQVLDSFFLCCSGSLSNCLHYDFGLRAMK 2064



 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 7/51 (13%)

Query: 95   WLKNLENEIRSSL-QNMTLKCLVTNSLHEQDPFSLPTQILCLAQNIRFTEQ 144
            W + L +++ + L +N  + CL  + +H Q    LP Q+LC++++I F +Q
Sbjct: 3971 WAEKLPSKMSNHLHKNSRIVCL--SEIHNQ----LPHQLLCISRSIVFNKQ 4015


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 333 LTSDTLAAVTHQFSSLLSAMTHRTPGTVPTASLNGKNVS 371
           +TS +LA+ +   SSL S+ T+ T    PT+S    ++S
Sbjct: 144 ITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLS 182


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 8/89 (8%)

Query: 106 SLQNMTLKCLVT--NSLHEQDPFSLPTQILCLAQN-IRFTEQAERA----INSKELHKFR 158
           S  ++   CLVT  + L +Q   ++   +  +AQ    F E  +      +N   L ++ 
Sbjct: 88  SCNSLAFCCLVTLIDGLRKQGAENVTLTLFAIAQGQYLFPESVDNGQKHVLNDSGLLRWW 147

Query: 159 AN-VEKENLYYAEAETDDENERLKRQALI 186
            N +EK   YY ++E  +++E+ K   L+
Sbjct: 148 VNCLEKLRKYYTDSEAPNDSEKQKNSTLL 176


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 130 TQILCLAQNIRFTEQ--AERA--INSKELHKFRAN-VEKENLYYAEAETDDENERLKRQ 183
           T+ L   + + F E+  A+R   I SK   K R N  EKE     ++E D ENER+K +
Sbjct: 430 TRQLRFMRELMFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIPKSEEDLENERIKSE 488


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/55 (23%), Positives = 27/55 (49%)

Query: 146 ERAINSKELHKFRANVEKENLYYAEAETDDENERLKRQALILQCAYYLSVIKILI 200
           E A+N  EL K      K   + AEA    +N+  + +  ++   ++++V  I++
Sbjct: 241 EAALNEAELAKTNLEAWKARAFTAEARLSSKNKSWQEKKYLVLSPFFIAVAGIIV 295


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 96   LKNLENEIRSSLQNMTLKCLVTNSLHEQD--PFSLP-TQILCLAQNIRFTEQAERAI 149
            LKNLE+E+   L++M  + + +  L E+   PF L   +I+C A ++    +A + +
Sbjct: 1373 LKNLEHELIKHLKHMKKESVYSKKLEEEYWLPFLLSFNEIICEASDLEVRSKALKVL 1429


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 83  DHPIDIDCAVEVWLKNLENEIRSSLQNMTLKCLVTNSLHEQDPFSLPTQILCLAQNIRFT 142
           D P+  D A++V   N+E  I   LQ +     + N +      SLP ++      +   
Sbjct: 294 DAPVTQDVAIKVLHPNVEKYISLDLQILGFFAKLINLVPSMKWLSLPDEVKVFGAML--N 351

Query: 143 EQAERAINSKELHKFRANVEKENLYYAEAETDD 175
           +Q      +  L++FR N          A  DD
Sbjct: 352 QQLNLHYEALHLNQFRLNFRGNRYVEFPAPYDD 384


>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 315 LTGLALSGAWGCFDEFNRLTSDTLAAVTHQFSSLLSAMTHRTP 357
           L+GLA+ G WG  +E  + T D + +   + + +L+ +T R P
Sbjct: 92  LSGLAIGGLWG-LNEGMKKTKD-ITSTRLRLNGILNGVTRRGP 132


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,839
Number of Sequences: 5004
Number of extensions: 80310
Number of successful extensions: 252
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 12
length of query: 560
length of database: 2,362,478
effective HSP length: 76
effective length of query: 484
effective length of database: 1,982,174
effective search space: 959372216
effective search space used: 959372216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)