GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000911-TA|BGIBMGA000911-PA|IPR013602|Dynein heavy chain,
N-terminal region 2
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365...    32   1.0  
07_03_0272 - 16143201-16144937,16145346-16145351,16145406-161455...    31   3.2  
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375...    30   4.2  
03_06_0678 - 35480711-35484658                                         30   5.6  
01_05_0127 - 18401461-18401464,18401868-18403876,18404060-184042...    30   5.6  
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131...    29   7.4  
03_06_0682 - 35516081-35518303                                         29   9.8  

>03_05_0432 - 24231984-24233048,24233391-24235160,24235261-24236582,
            24236668-24237013
          Length = 1500

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 96   LKNLENEIRSSLQNMTLK----CLVTNSLHEQDPFSLPTQILCLAQNIRFTEQAERAINS 151
            L +L+NE+ S+L+  TL     CL +N L  ++  +L TQ+L         +   R +  
Sbjct: 1116 LGSLQNEV-SALEKQTLSLANDCLQSNKLRMEEN-ALSTQVLKTNMRSSGDQNTVRTVKD 1173

Query: 152  KELHKFRANVEKENLYYAEAETDDENERLKRQALILQCAYYLSVIKI 198
             EL K    ++       +     + ERL   A + +    + V+K+
Sbjct: 1174 MELQKLHGTIKALQKVVTDTAVLLDQERLDFNANLQEARKQIEVLKL 1220


>07_03_0272 -
           16143201-16144937,16145346-16145351,16145406-16145535,
           16145613-16145773,16146608-16146725,16147328-16147441,
           16149378-16149469,16149906-16149986,16150168-16150473
          Length = 914

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 17/68 (25%), Positives = 34/68 (50%)

Query: 139 IRFTEQAERAINSKELHKFRANVEKENLYYAEAETDDENERLKRQALILQCAYYLSVIKI 198
           ++  +Q+   I +K L +   N++K ++       DDE  RL+   L + C    +  ++
Sbjct: 246 VKSMKQSGDGIKTKHLTRVIGNLDKFHVKPYGTLIDDEQRRLREHWLNISCNDIPAAFEV 305

Query: 199 LIDNNVTS 206
           L +N VT+
Sbjct: 306 LKNNRVTT 313


>01_07_0288 +
           42534552-42534558,42535302-42537280,42537367-42537513,
           42537982-42538526,42538906-42538981,42539357-42539437
          Length = 944

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 34/150 (22%), Positives = 59/150 (39%), Gaps = 6/150 (4%)

Query: 96  LKNLENEIRSSLQNMTLKCLVTNSLHEQDPFSLPTQILCLAQNIRFTEQAERAIN--SKE 153
           +  L+NE  S+L   +L      SLH     S    +  ++++   +  + R  +    E
Sbjct: 753 IHQLQNESISALNTPSLN--TGRSLHANGISSQHKSLGSISEHSEVSTHSHRVSSPHDTE 810

Query: 154 LHKFRANVEKENLYYAEAETDDENERLKRQALILQCAYYLSVIKILIDNNVTSTSEWIWR 213
           L   RA +  + L+ A  ++DD N R  R     +  Y       L  N V   +EWI +
Sbjct: 811 LSNRRARISSDELFSASGKSDDSNNRDARSLQNGEDGYKPRGTVSLSSNQV--QAEWIEQ 868

Query: 214 KQFRFYLLNTKEVVARMGLAQIPYSYEYLG 243
            +   Y+  T        L ++ +S    G
Sbjct: 869 YEPGVYITLTTLRDGTRDLKRVRFSRRRFG 898


>03_06_0678 - 35480711-35484658
          Length = 1315

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 73  CSHFGEVFQLDHPIDIDCAVEVWLKN 98
           C  F  +F  DH ID++  +++W+ N
Sbjct: 429 CFSFCAIFPKDHEIDVEMLIQLWMAN 454


>01_05_0127 -
           18401461-18401464,18401868-18403876,18404060-18404237,
           18404381-18404958,18405609-18405611
          Length = 923

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 84  HPIDIDCAVEVWLKNLENEIRSSLQNMTLKCLVTNSLHEQDPFSLPTQILCLAQNIRF 141
           HP+ +DC +E+       EI   L  M      T SLH  D  S+    L +  N +F
Sbjct: 644 HPVPLDCHIEIAEGGSNLEIEQDLYGMGSLIYNTQSLHIHDNSSISIGNLGVKGNKQF 701


>02_03_0387 -
           18412064-18412144,18412280-18412361,18412922-18413142,
           18413387-18413745,18413834-18414443,18414546-18414605,
           18414685-18414751,18414843-18414936,18415012-18415125,
           18415242-18415308,18415386-18415551,18416587-18417080
          Length = 804

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 131 QILCLAQNIRFTEQAERAINSKELHKFRANVEKENLYYAEAETDDENER 179
           +IL      R  ++  +A   K LH+ RA  E++N+     E DDE ++
Sbjct: 188 EILSWVGKSRKLDEKRQAEKEKALHRARALEEQDNILAENDEDDDEEQQ 236


>03_06_0682 - 35516081-35518303
          Length = 740

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 73  CSHFGEVFQLDHPIDIDCAVEVWLKN 98
           C  F  +F  DH ID++  +++W+ N
Sbjct: 426 CFAFCAIFPKDHVIDVEMLIQLWMAN 451


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,861
Number of Sequences: 37544
Number of extensions: 496734
Number of successful extensions: 1151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1145
Number of HSP's gapped (non-prelim): 8
length of query: 560
length of database: 14,793,348
effective HSP length: 86
effective length of query: 474
effective length of database: 11,564,564
effective search space: 5481603336
effective search space used: 5481603336
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)