Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000911-TA|BGIBMGA000911-PA|IPR013602|Dynein heavy chain,
N-terminal region 2
(560 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 317 2e-86
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 222 5e-58
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 222 5e-58
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical pr... 29 6.6
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 29 6.6
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 29 6.6
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 29 6.6
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 29 6.6
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 29 6.6
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 317 bits (778), Expect = 2e-86
Identities = 178/520 (34%), Positives = 271/520 (52%), Gaps = 18/520 (3%)
Query: 17 FQDFYFLSDDDLLELLGQARTGSEGREVVMQSHLKKLFPGITGVRLGPGGMSVTALCSHF 76
F FYF+ DDDLLE+LGQ+ V+Q+H+KKLF GI V+ G ++ ++ S
Sbjct: 1387 FPRFYFIGDDDLLEILGQSTNPQ-----VIQTHMKKLFQGINRVQFSSTGETIISMVSSE 1441
Query: 77 GEVFQLDHPIDIDCAVEVWLKNLENEIRSSLQNMTLKCLVTNSLHEQDPFSLPTQILCLA 136
GE L + I VE WL+ L +E+R +L+++T + + + P+Q+LCLA
Sbjct: 1442 GETVPLSKAVRIVPQVESWLQELSDEMRRTLKDLTAQAVADA---QPSLAKYPSQVLCLA 1498
Query: 137 QNIRFTEQAERAIN-SKELHKFRANVEKENLYYAEAETDDENERLKRQALILQCAYYLSV 195
+ ++F+ E +N S +L+ F++ + ++ Y + DD+ LK ++LIL +++ V
Sbjct: 1499 EEVKFSASIENNLNGSSDLNSFKSQLLEKLKAYTNMKVDDKVSDLKLKSLILDLIHHIDV 1558
Query: 196 IKILIDNNVTSTSEWIWRKQFRFYLLNTKEVVARMGLAQIPYSYEYLGTQTGQFVRTEVA 255
+ L+ N S + W W++Q RFYL+N +V R ++ Y+YEY G + V T +
Sbjct: 1559 VDQLLTNQAKSINSWTWQRQLRFYLVNGG-IVLRQVSSEFEYTYEYQGNYA-KLVHTPLT 1616
Query: 256 DECFLILTQALHLGFVGNPFGPAGTGKTESVKAXXXXXXXXXXXFNCDEAMDAECMGRLL 315
D+C+L LTQA+++G GNP+GPAGTGKTESVKA FNCDE +D MGR+
Sbjct: 1617 DKCYLTLTQAMYMGLGGNPYGPAGTGKTESVKALAALMGRQVLVFNCDEGIDVTSMGRIF 1676
Query: 316 TGLALSGAWGCFDEFNRLTSDTLAAVTHQFSSLLSAMTHRTPGTVPTASLNGKNVSVSVW 375
TG+ GAWGCFDEFNRL S L+AV+ Q ++ A+ R + + GKNV V+
Sbjct: 1677 TGIVECGAWGCFDEFNRLDSTVLSAVSMQIQTIQGAIKSR----AGSCTFGGKNVQVNPN 1732
Query: 376 CGVAATLNPSSRGYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPHAERLAAD 435
+ TLNP+ +GYGG A LA
Sbjct: 1733 SAIFVTLNPAGKGYGGRQKMPDNLKQLFRAVVMGKPDNELISSTILYSEGFVDATALARK 1792
Query: 436 LHDVFTLASALLSGQRHYDWGLRALKXXXXXXXXXXXXXXXXXXXXXL---LAVNNVSKL 492
+ VF L+ +LS Q+HYDWGLRALK + L +N +SKL
Sbjct: 1793 IVSVFQLSRQMLSKQQHYDWGLRALKVVLGGCGALRRTQTNKNETDLVVQALLLNTLSKL 1852
Query: 493 TAPDARIFHKILSLVFADVKDLHATADPIVNALEGSVQNL 532
T D+ F+ ++ +F++V + +V L + Q +
Sbjct: 1853 TFSDSERFNSLIDDIFSNVTKEMTKFEELVEPLGVAAQEM 1892
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 222 bits (543), Expect = 5e-58
Identities = 155/467 (33%), Positives = 227/467 (48%), Gaps = 37/467 (7%)
Query: 17 FQDFYFLSDDDLLELLGQARTGSEGREVVMQSHLKKLFPGITGVRLGPGGMSVTALCSHF 76
F FYF+ D+DLLE++G ++ + +Q HLKK+F GIT + + S+TA S
Sbjct: 1593 FPRFYFVGDEDLLEIMGNSKDITR-----IQKHLKKMFAGITAIDINEEDRSITAFHSRE 1647
Query: 77 GEVFQLDHPIDI-DCAVEVWLKNLENEIRSSL-----------QNMTLKCLVTNSLHEQ- 123
GE L + D + WL+ LE E++ +L M ++ + T+ E
Sbjct: 1648 GEKVDLVKIVSTKDVRINDWLQALEAEMKHTLARQLAASLTHFSKMNIQTMTTDDYVEWL 1707
Query: 124 DPFSLPTQILCLAQNIRFTEQAERAI-NSKELHKFRANVEKENLYYAEAETDDEN--ERL 180
D F P Q++ L I + ++ E+ + + K V K A++ ++ R
Sbjct: 1708 DKF--PAQVITLTAEIWWCDEMEKTLADGKGAENVEQAVVKTLELLADSVLKEQPPIRRK 1765
Query: 181 KRQALILQCAYYLSVIKILIDNNVTSTSEWIWRKQFRFYLLNTKEV------VARMGLAQ 234
K +ALI + + + L+ + + +++ W + RFY + K+V V +M +Q
Sbjct: 1766 KMEALITELVHKRDTCRKLVSMKIRAANDFGWLQCMRFYF-DPKQVDPVRCCVVKMANSQ 1824
Query: 235 IPYSYEYLGTQTGQFVRTEVADECFLILTQALHLGFVGNPFGPAGTGKTESVKAXXXXXX 294
Y +EYLG Q + VRT + D C+L +TQALH G+PFGPAGTGKTESVKA
Sbjct: 1825 FFYGFEYLGIQE-RLVRTPLTDRCYLTMTQALHSRLGGSPFGPAGTGKTESVKALGHQLG 1883
Query: 295 XXXXXFNCDEAMDAECMGRLLTGLALSGAWGCFDEFNRLTSDTLAAVTHQFSSLLSAMTH 354
FNCDE D + MGR+L GL GAWGCFDEFNRL L+AV+ Q ++ A+
Sbjct: 1884 RFVLVFNCDETFDFQAMGRILVGLCQVGAWGCFDEFNRLEERMLSAVSQQIQTIQEAV-- 1941
Query: 355 RTPGTVPTASLNGKNVSVSVWCGVAATLNPSSRGYGGXXXXXXXXXXXXXXXXXXXXXXX 414
R G + + L GK ++V+ G+ T+NP GY G
Sbjct: 1942 RAGGDM-SVDLVGKRLNVNSNIGIFITMNP---GYSGRSNLPDNLKQLFRSLAMTQPDRQ 1997
Query: 415 XXXXXXXXXXSLPHAERLAADLHDVFTLASALLSGQRHYDWGLRALK 461
AE LA + +F L LS Q HYD+GLRALK
Sbjct: 1998 LIAQVMLFSQGFRTAETLANKIVPLFILCKEQLSDQCHYDFGLRALK 2044
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 222 bits (543), Expect = 5e-58
Identities = 155/467 (33%), Positives = 227/467 (48%), Gaps = 37/467 (7%)
Query: 17 FQDFYFLSDDDLLELLGQARTGSEGREVVMQSHLKKLFPGITGVRLGPGGMSVTALCSHF 76
F FYF+ D+DLLE++G ++ + +Q HLKK+F GIT + + S+TA S
Sbjct: 1593 FPRFYFVGDEDLLEIMGNSKDITR-----IQKHLKKMFAGITAIDINEEDRSITAFHSRE 1647
Query: 77 GEVFQLDHPIDI-DCAVEVWLKNLENEIRSSL-----------QNMTLKCLVTNSLHEQ- 123
GE L + D + WL+ LE E++ +L M ++ + T+ E
Sbjct: 1648 GEKVDLVKIVSTKDVRINDWLQALEAEMKHTLARQLAASLTHFSKMNIQTMTTDDYVEWL 1707
Query: 124 DPFSLPTQILCLAQNIRFTEQAERAI-NSKELHKFRANVEKENLYYAEAETDDEN--ERL 180
D F P Q++ L I + ++ E+ + + K V K A++ ++ R
Sbjct: 1708 DKF--PAQVITLTAEIWWCDEMEKTLADGKGAENVEQAVVKTLELLADSVLKEQPPIRRK 1765
Query: 181 KRQALILQCAYYLSVIKILIDNNVTSTSEWIWRKQFRFYLLNTKEV------VARMGLAQ 234
K +ALI + + + L+ + + +++ W + RFY + K+V V +M +Q
Sbjct: 1766 KMEALITELVHKRDTCRKLVSMKIRAANDFGWLQCMRFYF-DPKQVDPVRCCVVKMANSQ 1824
Query: 235 IPYSYEYLGTQTGQFVRTEVADECFLILTQALHLGFVGNPFGPAGTGKTESVKAXXXXXX 294
Y +EYLG Q + VRT + D C+L +TQALH G+PFGPAGTGKTESVKA
Sbjct: 1825 FFYGFEYLGIQE-RLVRTPLTDRCYLTMTQALHSRLGGSPFGPAGTGKTESVKALGHQLG 1883
Query: 295 XXXXXFNCDEAMDAECMGRLLTGLALSGAWGCFDEFNRLTSDTLAAVTHQFSSLLSAMTH 354
FNCDE D + MGR+L GL GAWGCFDEFNRL L+AV+ Q ++ A+
Sbjct: 1884 RFVLVFNCDETFDFQAMGRILVGLCQVGAWGCFDEFNRLEERMLSAVSQQIQTIQEAV-- 1941
Query: 355 RTPGTVPTASLNGKNVSVSVWCGVAATLNPSSRGYGGXXXXXXXXXXXXXXXXXXXXXXX 414
R G + + L GK ++V+ G+ T+NP GY G
Sbjct: 1942 RAGGDM-SVDLVGKRLNVNSNIGIFITMNP---GYSGRSNLPDNLKQLFRSLAMTQPDRQ 1997
Query: 415 XXXXXXXXXXSLPHAERLAADLHDVFTLASALLSGQRHYDWGLRALK 461
AE LA + +F L LS Q HYD+GLRALK
Sbjct: 1998 LIAQVMLFSQGFRTAETLANKIVPLFILCKEQLSDQCHYDFGLRALK 2044
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 508 FADVKDLH-ATADPIV-NALEGSVQNLKLVENKAQVSEK 544
F + + L+ A+A PI+ N EG++Q LKL+++ Q S +
Sbjct: 554 FDEAEKLYIASAGPIIDNGFEGAIQELKLIDDATQGSRQ 592
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 508 FADVKDLH-ATADPIV-NALEGSVQNLKLVENKAQVSEK 544
F + + L+ A+A PI+ N EG++Q LKL+++ Q S +
Sbjct: 194 FDEAEKLYIASAGPIIDNGFEGAIQELKLIDDATQGSRQ 232
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 508 FADVKDLH-ATADPIV-NALEGSVQNLKLVENKAQVSEK 544
F + + L+ A+A PI+ N EG++Q LKL+++ Q S +
Sbjct: 554 FDEAEKLYIASAGPIIDNGFEGAIQELKLIDDATQGSRQ 592
>Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical
protein C17E4.1 protein.
Length = 425
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 156 KFRANVEKENLYYAEAETDDENERLKRQALILQCAYYLSVIKI 198
KF EK+ TDDE E + +I+ CA L V+K+
Sbjct: 258 KFSKENEKDTSTTTTTTTDDEPEPNFSEEMIIMCARVLEVVKL 300
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 508 FADVKDLH-ATADPIV-NALEGSVQNLKLVENKAQVSEK 544
F + + L+ A+A PI+ N EG++Q LKL+++ Q S +
Sbjct: 554 FDEAEKLYIASAGPIIDNGFEGAIQELKLIDDATQGSRQ 592
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 508 FADVKDLH-ATADPIV-NALEGSVQNLKLVENKAQVSEK 544
F + + L+ A+A PI+ N EG++Q LKL+++ Q S +
Sbjct: 194 FDEAEKLYIASAGPIIDNGFEGAIQELKLIDDATQGSRQ 232
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 508 FADVKDLH-ATADPIV-NALEGSVQNLKLVENKAQVSEK 544
F + + L+ A+A PI+ N EG++Q LKL+++ Q S +
Sbjct: 554 FDEAEKLYIASAGPIIDNGFEGAIQELKLIDDATQGSRQ 592
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 508 FADVKDLH-ATADPIV-NALEGSVQNLKLVENKAQVSEK 544
F + + L+ A+A PI+ N EG++Q LKL+++ Q S +
Sbjct: 194 FDEAEKLYIASAGPIIDNGFEGAIQELKLIDDATQGSRQ 232
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 508 FADVKDLH-ATADPIV-NALEGSVQNLKLVENKAQVSEK 544
F + + L+ A+A PI+ N EG++Q LKL+++ Q S +
Sbjct: 533 FDEAEKLYIASAGPIIDNGFEGAIQELKLIDDATQGSRQ 571
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,650
Number of Sequences: 27539
Number of extensions: 431881
Number of successful extensions: 1133
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 12
length of query: 560
length of database: 12,573,161
effective HSP length: 85
effective length of query: 475
effective length of database: 10,232,346
effective search space: 4860364350
effective search space used: 4860364350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -