GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000911-TA|BGIBMGA000911-PA|IPR013602|Dynein heavy chain,
N-terminal region 2
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L...    33   0.50 
At5g52410.2 68418.m06502 expressed protein                             31   2.0  
At5g52410.1 68418.m06503 expressed protein                             31   2.0  
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar...    31   2.0  
At5g57035.1 68418.m07119 protein kinase family protein contains ...    31   2.7  
At5g39770.1 68418.m04817 repair endonuclease family protein cont...    30   3.5  

>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
           PROTEIN KIF4, Homo sapiens, EMBL:AF179308
          Length = 1051

 Score = 33.1 bits (72), Expect = 0.50
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 96  LKNLENEIRS--SLQNMTLKCLVTNSLHEQDPFSLPTQILCL-AQNIRFTEQAERAINSK 152
           LK LE +I +    Q   ++ L      E     L T+I C+ AQ ++  ++ ++   ++
Sbjct: 590 LKALETQILNLKKKQENQVEVLKQKQKSEDAAKRLKTEIQCIKAQKVQLQQKMKQ--EAE 647

Query: 153 ELHKFRANVEKENLYYAEAETDDENERLKRQAL 185
           +  +++A+ EKE L   +     E+ERLK +AL
Sbjct: 648 QFRQWKASQEKELLQLKKEGRKTEHERLKLEAL 680


>At5g52410.2 68418.m06502 expressed protein
          Length = 761

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 61  RLGPGGMSVTALCSHFGEVFQLDHPIDIDCAVEVW--------LKNLENEIRSSLQNMTL 112
           R+    M+   +C+H   V Q++  I+     E+         ++ L  E +S L  + +
Sbjct: 454 RIEAEAMAENVVCAHNELVAQVEKDINASFEKELLREKEIVDAVEKLAEEAKSELARLRV 513

Query: 113 KCLVTNSLHEQDPFSLPTQILCLAQNIRFTEQAERAINSKELHKFRANVEKENLYYAEAE 172
           +        E++  S+ T++  LA   R   + E  + S   +K   + EKE     + +
Sbjct: 514 EKEEETLALERERTSIETEMEALA---RIRNELEEQLQSLASNKAEMSYEKERFDRLQKQ 570

Query: 173 TDDENERLKR 182
            +DEN+ + R
Sbjct: 571 VEDENQEILR 580


>At5g52410.1 68418.m06503 expressed protein
          Length = 510

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 28/130 (21%), Positives = 56/130 (43%), Gaps = 11/130 (8%)

Query: 61  RLGPGGMSVTALCSHFGEVFQLDHPIDIDCAVEVW--------LKNLENEIRSSLQNMTL 112
           R+    M+   +C+H   V Q++  I+     E+         ++ L  E +S L  + +
Sbjct: 203 RIEAEAMAENVVCAHNELVAQVEKDINASFEKELLREKEIVDAVEKLAEEAKSELARLRV 262

Query: 113 KCLVTNSLHEQDPFSLPTQILCLAQNIRFTEQAERAINSKELHKFRANVEKENLYYAEAE 172
           +        E++  S+ T++  LA   R   + E  + S   +K   + EKE     + +
Sbjct: 263 EKEEETLALERERTSIETEMEALA---RIRNELEEQLQSLASNKAEMSYEKERFDRLQKQ 319

Query: 173 TDDENERLKR 182
            +DEN+ + R
Sbjct: 320 VEDENQEILR 329


>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
           hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
           PF02854: MIF4G domain
          Length = 1186

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 492 LTAPDARIFHKILSLVFADVKDLHATADPIVNALEGSVQNLKLVENKAQVSEKLSFGKRR 551
           +TA   + F K  +  +  + DL  +   ++  +E   +N KLV  K ++SE  +    +
Sbjct: 233 VTADQKKSFKKAFNTYYDALADLLQSEHKLLLQMEK--ENAKLVNAKGELSEDSASSYEK 290

Query: 552 FRRSYSH 558
            R+SY H
Sbjct: 291 LRKSYDH 297


>At5g57035.1 68418.m07119 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 786

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)

Query: 96  LKNLENEIRSSLQNMTLKCLVTNSLHEQDPFSL---PTQILCLAQN-IRFTEQAERAINS 151
           LK  ++ +R+ ++ +  +   T S+++Q    L    TQ+  L+   I+ TE+   A+  
Sbjct: 284 LKTPKSGVRAEVEQLRKEVQTTLSMYKQACEELVHKQTQVQSLSSECIKETERVITALEK 343

Query: 152 KELHKFRANVEKENLYYAEAETDDENERLKRQALILQCAYYLSVIKILIDNNVTSTSEWI 211
           +E+ +  A  EKE    A  E ++    L ++    Q A  L  +K  I+        ++
Sbjct: 344 EEMRRKAAAEEKEKHLKAVKEVEEAKSMLAKEFCERQLA-ELDALKQSIEKQKVIEQLFL 402

Query: 212 WRKQFRFYLLNTKEVVA 228
              ++R Y   TKE +A
Sbjct: 403 RDGRYRKY---TKEEIA 416


>At5g39770.1 68418.m04817 repair endonuclease family protein contains
            Pfam PF02732 : ERCC4 domain; similar to MUS81
            endonuclease (GI:16755674) [Mus musculus]; similar to
            repair endonuclease (TIGR:At5g41150) [Arabidopsis
            thaliana]
          Length = 1242

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 161  VEKENLYYAEAETDDENERLKRQALILQCAYYLSVIKILI-DNNVTSTSEWIWRKQFRFY 219
            VE++N+    +   D   R K Q L LQ +    +I IL  D N + T+E I    F   
Sbjct: 1026 VERKNVDDMRSSIMDN--RYKDQKLRLQRSGIKKLIYILEGDPNQSKTAESIKTACFTTE 1083

Query: 220  LLNTKEVVARMGLAQIPYSYEYLGTQTGQFVRTEVADE 257
            +L   +VV   GL +    Y YL     Q+ ++ V D+
Sbjct: 1084 ILEGFDVVRTNGLGETLRKYGYLTKSIYQYYKSLVNDD 1121


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,255,468
Number of Sequences: 28952
Number of extensions: 410733
Number of successful extensions: 1116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 6
length of query: 560
length of database: 12,070,560
effective HSP length: 85
effective length of query: 475
effective length of database: 9,609,640
effective search space: 4564579000
effective search space used: 4564579000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)