Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000909-TA|BGIBMGA000909-PA|IPR009050|Globin-like,
IPR013594|Dynein heavy chain, N-terminal region 1, IPR013602|Dynein
heavy chain, N-terminal region 2
(1237 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 31 1.00
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 31 1.00
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 31 1.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 29 4.0
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 4.0
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 29 5.3
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 29 5.3
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 29 5.3
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 5.3
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 28 9.3
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 28 9.3
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 28 9.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 9.3
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 28 9.3
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 28 9.3
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 524 LQAALDLSAIVQDQKTVYWDDVEQLANYTEKLKKMVL 560
L++AL SAI+ ++ V WDD+ L N E LK+ VL
Sbjct: 111 LRSALT-SAILVEKPNVRWDDIAGLENAKEALKETVL 146
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 31.1 bits (67), Expect = 1.00
Identities = 56/294 (19%), Positives = 118/294 (40%), Gaps = 21/294 (7%)
Query: 911 EWQKTRELMLNHQQMFENQAEIVKASLNGEWENLNTSVEAFVSRWTQSKARLDAAHDVHY 970
+W+ E + EN + + + + + +NT + +S W S L A+ +
Sbjct: 1218 KWKDLLESFECRRLKLENNKDEILRNFSEFAKRVNTETLSLISEWCASSLSLIKANYDEF 1277
Query: 971 EEMAD----RCRTVFEAIASWKKFITDREELVKECEKFNMKTDIADVWQQ-GDKLFENYE 1025
D R E K D E ++E F+++T+ ++++ D + N E
Sbjct: 1278 SSTVDDFLFRFSKATEQCLMVKYIKKDLEIEIEESCDFSIQTEEIHLYKKFKDVISSNLE 1337
Query: 1026 TLWTVFEKFNEEYESIAEQSWIVFQKKLHLLDEFTTKWSTRLEPYTVVTLFIQQELDRYS 1085
+ E N ++ + V + H ++ + T + + + T +Q L++
Sbjct: 1338 ---FIVEIKNTRWKLFDTATLSV--QTTHQINALESV-HTSFQHFKLFT-NTKQSLNQLK 1390
Query: 1086 DITPLLKYLRGNDFTDRHWREVFNLLE-MEYKKSDTLKVKDFLXXXXXXXXXXXXLQKIC 1144
D T LL+ L+ HW +F + + E + L V D L + +
Sbjct: 1391 DCTLLLQKLKSCPLKPVHWISLFEITKSTEQLDFEKLLVSDIL--GIDLQAHESFITTLL 1448
Query: 1145 TTATSESAIRSALNELEIWYAGARLSIIYYSDKT-KRPTPIIKDFKEIMNKVEE 1197
+A E+ + + NE+ ++ + Y+S K+ K I+ +E+++ VE+
Sbjct: 1449 NSAVVEANLENQFNEVHSFWKNS-----YFSFKSFKGRNYIVVGCQELIDAVEK 1497
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe|chr
2|||Manual
Length = 675
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 1028 WTVFEKFNEEYESIAEQSWIVFQKKLHLLDEFTTKWS---TRLEPYT-VVTLFIQQELDR 1083
W V ++ +E I S QK++ + +F +W +RL VV + +
Sbjct: 242 WPVLKETVDELIDILRYSPCTHQKRIRSVSDFERRWKLWRSRLANLRHVVKKHRDIDSEV 301
Query: 1084 YSDITPLLKYLRGND----FTDRHWREVFNLLEMEYKKSDTLKVKD 1125
D LL L GN + HW+E F+ L Y D +D
Sbjct: 302 LDDFVVLLDILNGNKEVIMLSCAHWQEYFSALAFLYGPLDCKNPED 347
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 105 VMEKKDASKKEREMSSTFSEQFQYIIEELRSMQSNVMID-AREAAENIGGILD 156
VME+ DA KKE E + F +EEL+ +++ D + EN+ I D
Sbjct: 855 VMEQYDARKKEIEELESKMSDFDQSVEELQDEMNSIKEDWVSKLEENVQCISD 907
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Query: 27 SENALSEFIYNSQTLLIQGYVHNDTLRLSMKGNDLYSSKLQKCLLELESVLRVVNYGKEK 86
S + + + S +L + + +DT R ++K + +K ++E +++ VN G E
Sbjct: 619 SNESFEDSLQASLNMLTERFYSDDTARNALKEAKASRAMAEKMVIERDAMAAQVNLGAED 678
Query: 87 GNVNAIFTIEDEFEYWKAVMEKKDASKKERE-MSSTFSEQFQYIIEELRSMQSNVMIDAR 145
+ED+ + + + K E + + + Q Q ELR + + D+
Sbjct: 679 LIAKLNKEVEDQKDVILSQKRTNETLKTEIDALQKSHVTQIQRSEVELRELYLLINSDSF 738
Query: 146 EAAEN 150
+ + N
Sbjct: 739 QGSTN 743
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 28.7 bits (61), Expect = 5.3
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 335 IFATSLVAMLKDIKNQIDSDETDVKMYQPPEMSPLVHRVQWAKQMEAKV-KEIKICADKH 393
++ + + +KD++N +E Y E++ L + ++ ++ +E+K D+
Sbjct: 428 LYQEQIQSSIKDMENVFRKNE-----YLMEELNELKNNLEVESSKVLRLDEEMKCLKDEQ 482
Query: 394 LSEFSGCPELTNLATQLLKDLKEMYVQLHEEWCRE--LQAQAKNGSL 438
LS+F LT+ L KDLK L +E R L++Q ++ L
Sbjct: 483 LSQFDTVFSLTDERDGLQKDLKNTKGNLDDEIGRSAFLKSQIRDQEL 529
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 351 IDSDETDVKMYQPPEMSPLVHRVQWAKQMEAKVKEIKICADKHLSEFSGCPELTNLATQL 410
ID D+ + Y + +P + +W + EA++K++ +KH + +S +L+N
Sbjct: 235 IDRDKKSIYNYLRRKYNPFKKKCKWTIEDEAELKKL---VEKHGTSWSLIGKLSNRLPMH 291
Query: 411 LKDLKEMYVQ 420
+D Y+Q
Sbjct: 292 CRDHWRDYIQ 301
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 995 EELVKECEKFNMKTDIADVWQQGDKLF--ENYETLWTVFEKFNEEYESIAEQSWIVFQ 1050
EEL + K + +D++Q+ L E YE + EK+ E +++ E+++ FQ
Sbjct: 9 EELAQRIGKIEVGDTKSDIYQKVLNLIDIERYEHALKIIEKYLGETDAVYERAYCAFQ 66
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 5.3
Identities = 45/235 (19%), Positives = 91/235 (38%), Gaps = 10/235 (4%)
Query: 810 ISSLQTSCRTDASEVDAFVANVTVILNNKTLPNNSKDLTELSAKQHALQEKMPERGGKDS 869
+SS + ++ +D + N++ +K + S L E + K+ E +
Sbjct: 394 LSSFEQENKSLKGSIDEYQNNLSS--KDKMVKQVSSQLEEARSSLAHATGKLAEINSERD 451
Query: 870 SKNPCNQRISCQMEKIVAALKKKGNMLRTWGGDTSIDGTIKEWQKTRELMLNHQQMFENQ 929
+N + + + A L N L+ ID +E RE + +++ E+
Sbjct: 452 FQNKKIKDFEKIEQDLRACLNSSSNELKE--KSALIDKKDQELNNLREQIKEQKKVSEST 509
Query: 930 AEIVKASLNGEWENLNTSVEAFVSRWTQSKARL--DAAHDVHYEEMADRCRTVFEA-IAS 986
++ SL + N E + S+ + K L + ++ H EA +A+
Sbjct: 510 QSSLQ-SLQRDILNEKKKHEVYESQLNELKGELQTEISNSEHLSSQLSTLAAEKEAAVAT 568
Query: 987 WKKFITDREELVKECEKFNMKTDIADVWQQGDKLFENYETLWTVFEKFNEEYESI 1041
+ + L C F K +A Q + +N+ +L T F+K NE ++ +
Sbjct: 569 NNELSESKNSLQTLCNAFQEK--LAKSVMQLKENEQNFSSLDTSFKKLNESHQEL 621
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 27.9 bits (59), Expect = 9.3
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 2 ISARD-FIISTIELYFDGTRLKLDEESE-NALSEF--IYNSQTLLIQGYVHNDTLRLSMK 57
I ARD + + ++ D +KL+ SE AL IY + +L+QGY + + +
Sbjct: 979 IEARDAWTVMQKDVDIDLFNIKLEHTSEAEALDSHTAIYELKNILVQGYSQEEFRKSPPR 1038
Query: 58 GNDLYSSKLQKCLLELESVLRVVNYGKEKGNVNAIFTIE 96
G L L + VL + Y + K N ++T+E
Sbjct: 1039 GMQLKLGNLTNSHVTDTIVLSNLGYFQLKAN-PGVWTLE 1076
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 793 TLRREFEAQARTLWACLISSLQTSCRTDASEVDAFVANVTVILNNKTLPNNSKDLTELSA 852
TL +EF + L A L+ L E++ + N KT +NSK L E +
Sbjct: 882 TLEKEFNLPSNQLLAMLVK-LSKKIMKCIDEIETKDIEEELGSNKKTESSNSK-LPEFTP 939
Query: 853 KQHALQEKMPE 863
Q +L+E++ E
Sbjct: 940 LQQSLEEELQE 950
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 510 TLGERMIPSTKPMMLQAALDLSAIVQDQKTVYWDDVEQLANYTEKLKKMVLKLEGQNTYL 569
TLG M L + + +V D K + +D + +LK+ ++K +N
Sbjct: 491 TLGLEMFEDLFKASLAVLSETNEVVMDSKLICYDSWAGIPLRC-RLKQQLIKFVWRNKVF 549
Query: 570 TSQHMAIKDIVMKLIN 585
+A+ ++ KLIN
Sbjct: 550 LFGILALSGVIFKLIN 565
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.9 bits (59), Expect = 9.3
Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Query: 6 DFIISTIELY--FDGTRLKLDEESENALSEFIYNSQTLLIQGYVHNDTLRLSMKGNDLYS 63
D I ++ Y + G R KL EN ++ + L+ ++ + +K +D Y+
Sbjct: 508 DEISEIVDSYHKYSGVRTKLQVFEENKTNKSAILANQLMTLKSSFSEVMSYELKDDDNYN 567
Query: 64 SKLQKCLLELESVLRVVNYGKEK-GNVNAIFTIEDEFEYWKAVMEKKDASKKEREMSSTF 122
+L K + ++ L+ + +V I +++ + + K + + ++
Sbjct: 568 EELDKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSV-QSINDLTENKKIKTKTLKSY 626
Query: 123 SEQFQYIIEELRSMQSNV 140
S F +I E+++++S +
Sbjct: 627 SGTFASMISEIKALESEI 644
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 27.9 bits (59), Expect = 9.3
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 548 LANYTEKLKKMVLKLEGQNTYLTSQHMAIKDIVMKLINTELLAKLSEWKKGVKDIRSIIE 607
L + ++++KK + +L+G + T+ +++ IV+ L + L +K ++ R +
Sbjct: 174 LKSSSDEVKKRLQRLKGNELHSTAHFVSLLLIVLFLTHFRL-------RKAEREKRRLQN 226
Query: 608 TVEGNGYRNTE-LWRSHWDWQLYKALECQYIKTLLSLDKHFAHIKVDLVL-RGHKI 661
E N RN + + S D + +A E + I + +++ +DL +GHKI
Sbjct: 227 --ERNRERNAQRVSASKLDLAILEAAEVEEINSTTEIEEKVDEASLDLYTPKGHKI 280
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 373 VQWAKQMEAKVKEIKICADKHL----SEFSGCPELTNL--ATQLLKDLKEMYVQLHEEWC 426
V+ K + K+ E+ + D+H+ SE C +LT L Q L+D+ + ++ E+
Sbjct: 259 VEETKHLLEKLTEVNVMCDRHMDAISSEELACHQLTQLKKVVQTLEDIYSEHKKVSEDVK 318
Query: 427 RELQAQAKNG 436
+ +A NG
Sbjct: 319 DQRFLEAING 328
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,439,513
Number of Sequences: 5004
Number of extensions: 226592
Number of successful extensions: 763
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 21
length of query: 1237
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1156
effective length of database: 1,957,154
effective search space: 2262470024
effective search space used: 2262470024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -