Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000909-TA|BGIBMGA000909-PA|IPR009050|Globin-like,
IPR013594|Dynein heavy chain, N-terminal region 1, IPR013602|Dynein
heavy chain, N-terminal region 2
(1237 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 35 0.36
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 33 1.4
07_01_0231 - 1698244-1700154 32 2.5
05_07_0093 - 27648656-27648736,27649034-27649147,27649229-276492... 32 3.3
02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916 32 3.3
05_01_0266 - 2040555-2040722,2041248-2041349,2041461-2041958,204... 31 4.4
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037... 31 4.4
03_05_0615 + 26137785-26138593,26139307-26141368 31 7.6
>10_08_0829 -
20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 35.1 bits (77), Expect = 0.36
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 339 SLVAMLKDIKNQIDSDETDVKMYQPPEMSPLVHRVQWAKQMEAKVKEIKICADKHLSEFS 398
SL+ LKD Q+++ + ++K+ S + + +Q+EA+ E+K+ D+ S +
Sbjct: 817 SLITNLKDELEQVEAQKVELKLQMDESRSLITNLKDELEQVEAQKVELKLQMDESRSLIT 876
Query: 399 GC-PELTNLATQLLKDLKEMYVQLHEEWCRELQAQAK-----NGSLQMSTDKPVVE 448
EL + Q + +LKE ++ H E+Q ++ N LQ + D V E
Sbjct: 877 NLKDELEQVEAQKV-ELKENQLESHRR-LSEVQEDSEALRRSNAKLQATVDHVVEE 930
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 33.1 bits (72), Expect = 1.4
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 269 NGPNPAWQAAVSLFSTSLRQVEVKVAEKLKPRLHNTSTKQMLYEFLRYEALIERPYVKQT 328
NG + V L S ++ + +V ++ +N ST++M ++ L Y L + PY
Sbjct: 83 NGVQKPFLGYVELLSIDVQLSQARVRTRISSSCYNISTREMNFDDLWYVDLKDTPYRFSD 142
Query: 329 LNNELEIFATSLVAMLKD 346
N+ I +A + D
Sbjct: 143 SANKFTIIGCRTLAYIAD 160
>07_01_0231 - 1698244-1700154
Length = 636
Score = 32.3 bits (70), Expect = 2.5
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 391 DKHLSEFSGCPELT-NLATQLLKDLKEMYVQLHEEW 425
DKHL F G P L + +++KD+ + LHEEW
Sbjct: 434 DKHLYNFHGQPTLNWSQRFKIIKDIASGLLYLHEEW 469
>05_07_0093 - 27648656-27648736,27649034-27649147,27649229-27649288,
27649464-27649687,27649799-27649886,27650326-27650532,
27650566-27650784,27650903-27651001,27651439-27651504,
27651654-27651737,27651829-27651888,27652041-27652325,
27652789-27652836,27652988-27653034,27653442-27653556,
27653958-27654032,27654227-27654298,27654944-27656124,
27656613-27656757
Length = 1089
Score = 31.9 bits (69), Expect = 3.3
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 868 DSSKNPCNQRISCQMEKIVAALKKKGNMLRTWGGDTSIDGTIKE--------WQKTRELM 919
D+ K+ +QR++ K+ A K++ + R + +KE + E
Sbjct: 475 DALKDEYHQRVATLERKVYALTKERDTLRREQNKKSDAAALLKEKDEIISQVMAEGFEAF 534
Query: 920 LNHQQMFENQAEIVKASLNGEWENLNTSVEAFVSRWTQSKARLDAAHDVHYEEMADRCRT 979
+ HQQ F N E V+ L E + LN+ ++ ++ +S R AA + +E +R +T
Sbjct: 535 IWHQQFFYN--EQVR-ELEEEKQRLNSKIQVEETK-VESIKRDKAATEKLLQETIERNQT 590
Query: 980 VFEAIASWKKFITDREELVKECE 1002
+A+ K+F T+ KE E
Sbjct: 591 ---ELAAQKEFYTNALNAAKEAE 610
>02_03_0035 + 14173497-14173519,14173646-14173853,14173979-14175916
Length = 722
Score = 31.9 bits (69), Expect = 3.3
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 103 KAVMEKKDASKKEREMSSTFSEQFQYIIEELRSMQSNVMIDAREAAEN 150
+A+ E+KD KE E S E+ + +E++ S + +ARE+ EN
Sbjct: 429 EAICEEKDKLAKELESSKYECEKVRKAMEDMASALQEMSAEARESQEN 476
>05_01_0266 -
2040555-2040722,2041248-2041349,2041461-2041958,
2042372-2042479,2042559-2042753
Length = 356
Score = 31.5 bits (68), Expect = 4.4
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 663 VQPPIEEIRVQHYHQLRRLVSLPAQFVGVQNNITERQSIFADIVDKHSWLGNKAVKKLEQ 722
+ P ++++ + R +VSL A+ V+N + ++ +F + KA + +E+
Sbjct: 18 LDPLLKDLTEKKLSFRRNVVSLAAELKDVRNKLASQEQLFVRESQTRKFAETKA-RSMEE 76
Query: 723 VLSSLEQC--GRQWTRRAALACVPDLRALCTHS 753
+S L++C + R++ C + L +S
Sbjct: 77 EISKLQKCLNDKDEQLRSSTGCTEQMHFLNNYS 109
>02_01_0138 +
999809-999821,1000456-1001341,1001424-1003221,
1003716-1003805,1004034-1004111,1004513-1004518,
1004849-1004958,1005174-1005369
Length = 1058
Score = 31.5 bits (68), Expect = 4.4
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 364 PEMSPLVHRVQWAKQMEAKVKEIKICADKHLSEFSGCPELTNLATQLLKDLKEMYVQLHE 423
PE P + R+ + K ++ C + SGC L L + L L+ + +Q++
Sbjct: 648 PEGLPCLRRLSLCRSQHLKSMQLHSCTSLEYLKISGCRSLVVL--EGLSSLRRLDIQMNP 705
Query: 424 E----WCRELQAQAKNGS 437
E W +LQ Q + G+
Sbjct: 706 ELSAAWHLKLQEQEQGGN 723
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 30.7 bits (66), Expect = 7.6
Identities = 16/64 (25%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 545 VEQLANYTEKLKKMVLKLEGQNTYLTSQHMAIKDIVMKLINTELL-AKLSEWKKGVKDIR 603
+ +LA E+ V ++ + T+LT + ++ +++KL + E L ++L EW+ V+++
Sbjct: 12 LSKLATLAEQKYGDVRRIRREITFLTDELSSMNALLLKLADMEELDSQLKEWRNKVRELA 71
Query: 604 SIIE 607
+E
Sbjct: 72 YDVE 75
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,517,306
Number of Sequences: 37544
Number of extensions: 1326887
Number of successful extensions: 3684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3677
Number of HSP's gapped (non-prelim): 14
length of query: 1237
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1147
effective length of database: 11,414,388
effective search space: 13092303036
effective search space used: 13092303036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)
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