GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000909-TA|BGIBMGA000909-PA|IPR009050|Globin-like,
IPR013594|Dynein heavy chain, N-terminal region 1, IPR013602|Dynein
heavy chain, N-terminal region 2
         (1237 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   3.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   5.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   5.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   6.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   8.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 34  FIYNSQTLLIQGY-VHNDTLRLSMKGNDLYSSKL---QKCLLELES 75
           + YN +   +    V N  LR+S  G+ LYS +L    KC +EL +
Sbjct: 123 YFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRN 168


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 307 KQMLYEFLRYEALIERPYVKQTLNNELEIFATSLVAMLKDIKNQIDSDETDVKMYQPPEM 366
           K++L E L     +ERP   ++   E++   T    +  D KNQI +    +K      +
Sbjct: 56  KRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLK------L 109

Query: 367 SPLVHRVQWAKQMEAKVKEIKICADK 392
             + + +QW +     VK+++I  +K
Sbjct: 110 EWVDYNLQWNESEYGGVKDLRITPNK 135


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 307 KQMLYEFLRYEALIERPYVKQTLNNELEIFATSLVAMLKDIKNQIDSDETDVKMYQPPEM 366
           K++L E L     +ERP   ++   E++   T    +  D KNQI +    +K      +
Sbjct: 56  KRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDEKNQILTTNAWLK------L 109

Query: 367 SPLVHRVQWAKQMEAKVKEIKICADK 392
             + + +QW +     VK+++I  +K
Sbjct: 110 EWVDYNLQWNESEYGGVKDLRITPNK 135


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 103 KAVMEKKDASKKEREM----SSTFSEQFQYIIEELRSMQSNVMIDAREA 147
           K+ ME    S K+RE     +   +E+ + + EEL  ++ N+MI+ + A
Sbjct: 835 KSFMELSLRSVKDRETIISAAEKIAEELKIVPEELVPLEGNLMINNKYA 883


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 833 VILNNKTLPNNSKDLTELSAKQHALQEKMPE 863
           V +N    P NSK  +E SA    L+E MPE
Sbjct: 172 VDINYVEYPQNSKRNSEESAICAMLKENMPE 202


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.131    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 335,924
Number of Sequences: 429
Number of extensions: 13936
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 5
length of query: 1237
length of database: 140,377
effective HSP length: 66
effective length of query: 1171
effective length of database: 112,063
effective search space: 131225773
effective search space used: 131225773
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)