Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000909-TA|BGIBMGA000909-PA|IPR009050|Globin-like,
IPR013594|Dynein heavy chain, N-terminal region 1, IPR013602|Dynein
heavy chain, N-terminal region 2
(1237 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35604.1 68418.m04242 hypothetical protein 38 0.032
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 37 0.073
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 33 1.2
At2g45910.1 68415.m05709 protein kinase family protein / U-box d... 33 1.2
At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical... 33 1.6
At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical... 33 1.6
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 33 1.6
At5g64480.1 68418.m08101 expressed protein 32 2.1
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 32 2.1
At3g15115.1 68416.m01912 expressed protein 32 2.1
At2g24840.1 68415.m02971 MADS-box family protein 32 2.8
At3g51290.1 68416.m05614 proline-rich family protein 31 3.6
At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal hydrolase-r... 31 4.8
At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) famil... 31 4.8
At2g35510.1 68415.m04349 WWE domain-containing protein contains ... 31 4.8
At1g52950.1 68414.m05988 replication protein-related low similar... 31 4.8
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 31 6.4
At4g03150.1 68417.m00428 expressed protein 31 6.4
At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)... 31 6.4
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 31 6.4
At1g77920.1 68414.m09080 bZIP family transcription factor contai... 31 6.4
At5g41830.1 68418.m05093 F-box family protein-related contains a... 30 8.4
At3g03110.1 68416.m00307 exportin 1, putative strong similarity ... 30 8.4
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 38.3 bits (85), Expect = 0.032
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 863 ERGGKDSSKNPCNQRISCQMEKIVAALKKKGNMLRTW-GGDTSIDGTIKEWQKT-RELML 920
+ GG+ P ++ + K + A++K+GN+ R + +I T +W+ T RE L
Sbjct: 130 KEGGEHRDTPPRSKVVLVPQTKSLIAMEKEGNVFRCFKTRKDAILPTFDKWRPTIRERYL 189
Query: 921 NHQQMFENQAEIVKASLNGEWENLNTSVEAFVSRWTQSKARLDAAHDVHYEEMADRCRTV 980
H +A ++ +E L S E ++ W + L+A H + M D+ +
Sbjct: 190 LHAH-HTVRANSKFNNMVEHYEGLLLSWEQEINSWRNKFSSLEADHRSFSDSMNDK-HEL 247
Query: 981 FEAIASWK-KFITDREELVKECEKF-NMKTDIADVWQQGDKLFEN 1023
E + +K K + +EL + ++ +++T++A V D+LF++
Sbjct: 248 EEQVDHFKSKLLKSNDELQAQYGRYDDLQTELAGV---RDRLFQS 289
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 37.1 bits (82), Expect = 0.073
Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 911 EWQKTRELMLNHQQMFENQAEIVKASLNGEWENLNTSVEAFVSRWTQSKARLDAAHDVHY 970
E +KT+E + ++ + + +AS+ GE + L+ V++ T+ ++L+ D
Sbjct: 266 ETEKTQEEIQEFEKQIKALTQAKEASMGGEVKTLSEKVDSLAQEMTRESSKLNNKEDTLL 325
Query: 971 EEMADRCRTVFEAIASWKKFITDREELVKECEK 1003
E + + +I KK + +R VK+ E+
Sbjct: 326 GE-KENVEKIVHSIEDLKKSVKERAAAVKKSEE 357
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 33.1 bits (72), Expect = 1.2
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 1002 EKFNMKTDIADVWQQGDKLFENYETLWTVFEKFNEEYESIAEQSWIVFQKKLHLLDEFTT 1061
E + I +Q + +++++ + ++ K N++ + + +F+ LL+EFT
Sbjct: 136 EAISFVNKIKTRFQHNELVYKSFLEILNMYRKDNKDITEVYNEVSTLFEDHSDLLEEFTR 195
Query: 1062 KWSTRLEPYTVVTLFIQQELDRYSD 1086
L P+T L ++ + RY D
Sbjct: 196 FLPDSLAPHTEAQL-LRSQAQRYDD 219
>At2g45910.1 68415.m05709 protein kinase family protein / U-box
domain-containing protein contains Pfam profiles PF00069
Eukaryotic protein kinase domain, PF04564: U-box
domain; supported by tandem duplication of (GI:3386604)
(TIGR_Ath1:At2g45920) [Arabidopsis thaliana]
Length = 834
Score = 33.1 bits (72), Expect = 1.2
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 17 DGTRLKLDEESENALSEFIYNSQTLLIQGYVHNDTLRLSMKGNDLYSSKLQKCLLELESV 76
DG+ L DEE + + S T++ G H+ +D ++ K++K E S
Sbjct: 269 DGS-LNTDEEERESDGSEVTGSATVMSSG--HSSPSSFPDGVDDSFNVKIRKATSEAHSS 325
Query: 77 LRVV---NYGKEKGNVNAIFTI----EDEFEYWKAVMEKKD---ASKKEREMSSTFSEQF 126
+ ++K NA+ I + E Y + + +KD A KE+E T +
Sbjct: 326 KQEAFAETLRRQKAEKNALDAIRRAKQSESAYSEELKRRKDTEIAVAKEKERFITIKNEQ 385
Query: 127 QYIIEELRS-MQSNVMIDAREA 147
+ I+EEL+S M M++++ A
Sbjct: 386 EVIMEELQSAMAQKAMLESQIA 407
>At4g36730.2 68417.m05212 G-box binding factor 1 (GBF1) identical to
G-box binding factor 1 SP:P42774 from [Arabidopsis
thaliana]; contains Pfam profile: PF00170 bZIP
transcription factor
Length = 313
Score = 32.7 bits (71), Expect = 1.6
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 545 VEQLANYTEKLKKMVLKLEGQNTYLTSQHMAIKDIVMKLINTELLAKLSEWKKGVKD 601
VE L+N + L+ + +L + L S++ +I+D + +++ E +A L + G KD
Sbjct: 252 VESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQRVLGAEAVANLEQNAAGSKD 308
>At4g36730.1 68417.m05211 G-box binding factor 1 (GBF1) identical to
G-box binding factor 1 SP:P42774 from [Arabidopsis
thaliana]; contains Pfam profile: PF00170 bZIP
transcription factor
Length = 315
Score = 32.7 bits (71), Expect = 1.6
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 545 VEQLANYTEKLKKMVLKLEGQNTYLTSQHMAIKDIVMKLINTELLAKLSEWKKGVKD 601
VE L+N + L+ + +L + L S++ +I+D + +++ E +A L + G KD
Sbjct: 254 VESLSNENQSLRDELQRLSSECDKLKSENNSIQDELQRVLGAEAVANLEQNAAGSKD 310
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 32.7 bits (71), Expect = 1.6
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 830 NVTVILNNKTLPNNSKDLTELSAKQHALQEKMPERGGKDSSKNPCNQRISCQMEK----I 885
N + K + N+ D E K+ ++++ ERGGKD S+ R C+ I
Sbjct: 936 NSETMSEGKKIDRNNTD--EKEVKEKVTEKEIKERGGKDESRIQVKDRKKCEEPPRAGFI 993
Query: 886 VAALKKKGNMLRTWGG--DTSIDGTIKEWQKTR-ELMLNHQQMFE 927
+ + K + LR+ D+ +D T K+ ++ E+ L + ++E
Sbjct: 994 LQTKRNKDSKLRSLSASLDSLLDYTDKDLDESSFEISLFAESLYE 1038
>At5g64480.1 68418.m08101 expressed protein
Length = 184
Score = 32.3 bits (70), Expect = 2.1
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 988 KKFITDREELVKECEKFNMKTDIADVWQQGDKLFENYETLWTVFEKFNEEYESIAEQSW- 1046
KK +TD E + +A+ Q+ + + ++ E LW F + + E + W
Sbjct: 57 KKIMTDSELATDLAREIGKANTVAE--QRREAMKKSGEILWAEFCRHMDLKEDEMKIKWN 114
Query: 1047 -IVFQKKLHLLDEFTTKWSTRLEPYTVVTL 1075
I ++KL L+ EF +W+ +P ++ ++
Sbjct: 115 KIGEEEKLVLVREFVDEWAGDFQPLSITSV 144
>At5g58160.1 68418.m07280 formin homology 2 domain-containing protein
/ FH2 domain-containing protein low similarity to
SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 32.3 bits (70), Expect = 2.1
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 833 VILNNKTLPNNSKDLTELSAKQHALQEKMPERGGKDSS-KNPCNQRISCQMEKIVAALKK 891
V L N+ N K L E AK++A +++ P+ GG D+ K P N+ + + K K+
Sbjct: 1238 VRLFNRAHEENGKQL-EAEAKKNAAEKEKPKTGGLDTEIKKPLNEEVKEEKTKTSGLGKE 1296
Query: 892 KGNMLR 897
+ L+
Sbjct: 1297 MSDRLK 1302
>At3g15115.1 68416.m01912 expressed protein
Length = 339
Score = 32.3 bits (70), Expect = 2.1
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 837 NKTLPNNSKDLTELSAKQHALQEKMP---ERGGKDSSKNPCNQRISCQMEKIVAALKKKG 893
NK + + T + ++ LQ+K P E+G K+ S+ RISC V + G
Sbjct: 101 NKVMRRQFSEKTRVQERRTYLQKKEPVVREKGIKEGSRKKNRTRISCSNNNSVQSCSMGG 160
Query: 894 NMLRT 898
++ RT
Sbjct: 161 SLQRT 165
>At2g24840.1 68415.m02971 MADS-box family protein
Length = 264
Score = 31.9 bits (69), Expect = 2.8
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 10/135 (7%)
Query: 34 FIYNSQTLLIQGYVHNDTLRLSMKGNDLYSSKLQKCLL--ELESVLRVVNYGKEKGNVNA 91
F + S ++ YV + + L+ + L S C L +L +L V K+KG A
Sbjct: 118 FGHPSVESVLDRYVSRNNMSLA-QSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQ--A 174
Query: 92 IFTIEDEFEYWKAVMEKKDASKKEREMSSTFSEQFQYIIEELRSMQSNVMIDAREAAENI 151
+ + E ++++ + K EM+ ++ +Y +EELR M EA +++
Sbjct: 175 MEEMRKE-SVRRSMINWWE--KPVEEMNMVQLQEMKYALEELRKTVVTNMASFNEAKDDV 231
Query: 152 GGILDDIWRTTTAPY 166
G LD+ + T PY
Sbjct: 232 FGFLDN--KVTVPPY 244
>At3g51290.1 68416.m05614 proline-rich family protein
Length = 602
Score = 31.5 bits (68), Expect = 3.6
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 552 TEKLKKMVLKLEGQNTYLTSQHMAIKDIVMKLINTELLAKLSEWKKG 598
TEK KK V KLE Q + + + + ++KL TEL +L E KG
Sbjct: 337 TEKAKKDVEKLESQLSVSSQAIQSASNEIIKLRETELYPQLVELVKG 383
>At5g61940.1 68418.m07775 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1094
Score = 31.1 bits (67), Expect = 4.8
Identities = 17/85 (20%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 971 EEMADRCRTVFEAIASWKKFITDREELVKECEKFNMKTDIADVWQQGDKLFENYETLWTV 1030
+ ++ RC +F + W+ T+ E+ + + F+ + DI+ ++++G Y + V
Sbjct: 979 QHISSRCPPIFTIVLEWENSATE-NEISETTKAFDWEIDISRLYEEGLAPNTKYRLVSMV 1037
Query: 1031 -FEKFNEEYESIA--EQSWIVFQKK 1052
+ + +EE+ +A E W+ +++
Sbjct: 1038 GYSEGDEEHICLAYEENRWVNLRRE 1062
>At2g41835.1 68415.m05170 zinc finger (C2H2 type, AN1-like) family
protein contains Pfam domain, PF00096: Zinc finger, C2H2
type; contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 279
Score = 31.1 bits (67), Expect = 4.8
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 935 ASLNGEWENLNTSVEAFVSRW---TQSKARLDAAHDVHYEEMADRCRTVFEAIASWKKFI 991
+S + W NL +S EA +SR K + ++ D E+ +C F ++ S + +
Sbjct: 173 SSSSSRWSNLLSSAEAGISRLGNDISQKLQFSSSKDNGIVEVCPQCGAKFSSVTSLVEHV 232
Query: 992 TDREELVKECEKFNMKTDIADVWQQG 1017
E K+ N+ D+ +G
Sbjct: 233 EKTHERNKKQNHGNVTVDVCPRCSRG 258
>At2g35510.1 68415.m04349 WWE domain-containing protein contains Pfam
domain, PF02825: WWE domain
Length = 568
Score = 31.1 bits (67), Expect = 4.8
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 905 IDGTIKEWQKTRELMLNHQQMFENQAEIVKASLNGEWENLNTSVEAFVSRWTQSKARLDA 964
I G E RE+ L H ++ N E+ + +LN + +++ F + S D
Sbjct: 176 IRGEDPEQHDQREIKL-HIEIDVNSGELPRLNLNVVTDESGDNMDDFQAVQRSSNGPNDE 234
Query: 965 AHDVHYEEMADRC-RTVFEAIASWKKFITDREELVKECEKFNMKTDIADVWQQGDKLFEN 1023
A + D C R + +A+ W K TDR VK E+ K + ++ G +
Sbjct: 235 ASE-------DSCSRELDDAVEKWDKTETDRFSGVKPAEEELDKDAVKQMFALGAATLGH 287
Query: 1024 YETLWTVFEKFNEEYESIAEQSWIVFQKK 1052
E+L V++ F+ E IA+ +FQK+
Sbjct: 288 VESL-DVYQ-FSSE---IAKARLSLFQKQ 311
>At1g52950.1 68414.m05988 replication protein-related low similarity
to replication protein A1 GI:2258469 from (Oryza sativa)
Length = 566
Score = 31.1 bits (67), Expect = 4.8
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 334 EIFATSLVAMLKDIKNQIDSDETDVKMYQP-PEMSPLVHRVQWAKQMEAK-VKEIK 387
E+F ++ +++ KN + SD + + +P P PL R + +KQ E K + E+K
Sbjct: 224 EVFINPILTEVEEFKNLLPSDGLALTIMEPKPRFQPLRVREERSKQFERKTIAELK 279
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 30.7 bits (66), Expect = 6.4
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 43 IQGYVHNDTLRLSMKGNDLYSSKLQKCLLELESVLRVVNYGKEKGNVNAIFTIEDEFEYW 102
++ YV+ ++ + ++ ND+ S+L C L+ L+ G KGN AI T+E E W
Sbjct: 141 LEVYVYEESENIYLR-NDMIISELPLCTAWLDCPLK----GGGKGNFVAIGTMESSIEIW 195
>At4g03150.1 68417.m00428 expressed protein
Length = 185
Score = 30.7 bits (66), Expect = 6.4
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 210 SISDCLQVVETWTSACRALTETYWPNYALHPWNAKTYIPQ 249
S L + E W RA+ E+ W LH W Y P+
Sbjct: 78 SAVQALTIPEEWLLPSRAIEESEWLRVTLHKWLDDEYCPE 117
>At3g12400.1 68416.m01545 tumour susceptibility gene 101 (TSG101)
family protein contains Pfam profile PF05743: Tumour
susceptibility gene 101 protein (TSG101); similar to
Tumor susceptibility gene 101 protein (Swiss-Prot:Q99816)
[Homo sapiens]
Length = 398
Score = 30.7 bits (66), Expect = 6.4
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 920 LNHQQMFENQAEIVKASLNGEWENLNTSVEAFVSRWTQSKARLDAAHDVHYEEMADRCRT 979
++HQQ ++ AE+ K + +N VE S + +A + A R
Sbjct: 210 VHHQQQSDDAAEVFKRNA------INKMVEMVHSDLVSMRRAREAEAEELLSLQAGLKRR 263
Query: 980 VFEAIASWKKFITDREELVKECEKFNMKTDIADVW 1014
E K+ + ++E L ++ + +M TDI D W
Sbjct: 264 EDELNIGLKEMVEEKETLEQQLQIISMNTDILDSW 298
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 30.7 bits (66), Expect = 6.4
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 1002 EKFNMKTDIADVWQQGDKLFENYETLWTVFEKFNEEYESIAEQSWIVFQKKLHLLDEFTT 1061
+ N I ++ + +++++ + ++ K N+E + + + I+FQ L LL++FT
Sbjct: 142 QAINFVNKIKMRFKHDEHVYKSFLEILNMYRKENKEIKEVYNEVSILFQGHLDLLEQFTR 201
Query: 1062 KWSTRLEPYTVV---TLFIQQELDRYSDITPLLKYLR 1095
L ++ QQ DR SD PLL ++
Sbjct: 202 FLPASLPSHSAAQHSRSQAQQYSDRGSD-PPLLHQMQ 237
>At1g77920.1 68414.m09080 bZIP family transcription factor contains
Pfam profile: PF00170 bZIP transcription factor
Length = 368
Score = 30.7 bits (66), Expect = 6.4
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 65 KLQKCLLELESVLRVVNYGKEKGNVNA-IFTIEDEFEYWKAVMEKKDASKKEREMSSTFS 123
KL + ELE V + + G G++N I + E E+ +W ++ + + S
Sbjct: 125 KLSQLEQELEKVKQQGHLGPS-GSINTGIASFEMEYSHWLQEQSRRVSELRTALQSHISD 183
Query: 124 EQFQYIIEELRSMQSNVMIDAREAAE-NIGGILDDIWRTTT 163
+ + ++E + +N+ +AA+ ++ ++ +WRT+T
Sbjct: 184 IELKMLVESCLNHYANLFQMKSDAAKADVFYLISGMWRTST 224
>At5g41830.1 68418.m05093 F-box family protein-related contains a
novel domain similar to F-box that is shared among other
proteins in Arabidopsis; similar to proteins At3g54160,
At1g47920 (syntaxin SYP81), At3g44180, At1g56610,
At3g58890, At1g48390, At3g59270 [Arabidopsis thaliana]
Length = 463
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 76 VLRVVNYGKEKGNVNAIFTIEDEFEYWKAVMEKKDASKKEREMSSTFSEQFQYIIEELRS 135
V++++N+G + G+ + IE++ E+W+ V + D K+ ++ T + Q +
Sbjct: 366 VIKILNFG-DTGDFCQFWEIEEDCEFWEIVEDVADHIKQVKQFLETMPDLEQVTLYYNTP 424
Query: 136 MQSNVM 141
+VM
Sbjct: 425 QDEDVM 430
>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
Exportin1 (XPO1) protein [Arabidopsis thaliana]
GI:7671510; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1076
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 680 RLVSLPAQFVGVQNNITERQSIFADIVDKHSWLGNKAVKKLEQVL 724
++ LP+ GV++ +TERQ +++D + K L K E+VL
Sbjct: 391 QMAFLPSTVDGVKSEVTERQKLYSDPMSKLRGLMISRTAKPEEVL 435
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,939,008
Number of Sequences: 28952
Number of extensions: 1151303
Number of successful extensions: 3365
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3355
Number of HSP's gapped (non-prelim): 28
length of query: 1237
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1148
effective length of database: 9,493,832
effective search space: 10898919136
effective search space used: 10898919136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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