Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000907-TA|BGIBMGA000907-PA|IPR013026|Tetratricopeptide
region, IPR013105|Tetratricopeptide TPR_2
(349 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 30 0.43
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 30 0.43
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.74
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 28 1.7
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 28 1.7
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 28 2.3
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 3.0
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 27 3.0
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 27 4.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 9.2
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 9.2
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 30.3 bits (65), Expect = 0.43
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 107 SRDRPMPTQHLEDSVEDRVKQMEARIMALVEESCLLSAR 145
S + + + +ED +E R+ ++EAR+ LVE S LL AR
Sbjct: 62 SYESVLESSTIEDIIE-RITRLEARVRQLVESSQLLEAR 99
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 30.3 bits (65), Expect = 0.43
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 202 LADQYALNEMYTEALNTYQLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMAL 259
L Y + +M+ AL +Q T L P+ R+ +GN Y K+ +A+K Y+ AL
Sbjct: 412 LGQTYEVLDMHFYALYYFQRATA--LRPYDQRMWQALGNCYEKIDRPQEAIKSYKRAL 467
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 29.5 bits (63), Expect = 0.74
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 39 PALDTRNLREDETFQETLRTAGIGRKLPSRTGTGMVRLGTVSMRDVGSRSGTSAR 93
P D EDE + TLRTA G + P++ + TV+ +VGS++GT+ R
Sbjct: 271 PNADLIISEEDELTEMTLRTAN-GSE-PTKKSNRSEQSKTVANTNVGSKNGTTPR 323
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 28.3 bits (60), Expect = 1.7
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 209 NEMYTEALNTYQLLTRNKLFPHANRLKVN-MGNIYFKMGEHPKALKLYRMALD 260
NE Y++A+ T LL L H N ++ + YFK G PKA+ LD
Sbjct: 477 NEQYSDAVKTLGLL----LDDHENDPSLSELSWCYFKTGNLPKAISTVEKCLD 525
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 28.3 bits (60), Expect = 1.7
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 205 QYALNEMYTE-ALNTYQLLTRNKL--FPHANRLKVNMGNIYFKMGEHPKA--LKLYRMAL 259
Q+ E+ + A+ ++LL + L F N +N+ YF+MG H A L++Y+ +
Sbjct: 167 QFVAEEIDNDIAITAFRLLVGDLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLRIYKTFV 226
Query: 260 DQTPTAEKDLSDA 272
+QT LS A
Sbjct: 227 NQTEDIINYLSTA 239
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 117 LEDSVEDRVKQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEAST 172
L S + + + +A E+ L++ P PDD+ T + H++ +A E T
Sbjct: 133 LSTSTDAAKDDLLKKFIASEEKKELINCIPIPDDEKLTNRLHEVSEAFFALDEQHT 188
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 3.0
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 102 GYTSASRDRPMPTQHLEDSVEDRVKQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLG 161
G A +++ + Q + E+R++Q EA + +E R + + R++ +
Sbjct: 70 GSAEAGKEKKLQKQRAQ---EERIRQKEAERLKREKE------RQQREQEKKLREQEKI- 119
Query: 162 QALAKAQEASTMERQLIRMQEQ 183
A K +E +E++ IR+QEQ
Sbjct: 120 -AAKKMKELEKLEKERIRLQEQ 140
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 27.5 bits (58), Expect = 3.0
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 162 QALAKAQEASTMERQLIRMQEQANLGDTHNLDLTFAVLCNLADQYALNEMYTEALNTYQL 221
QALAK Q A+T +Q+ +QA+ T + +T V NL A +Y + Y+L
Sbjct: 212 QALAKGQVATTSPQQIPNQIQQASAATTASSKMT--VDTNLGT--AQPSLYNTPSSDYEL 267
Query: 222 LTRNK 226
+ K
Sbjct: 268 ANQEK 272
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 4.0
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 85 GSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVEDRVKQMEARIMALVEE 138
GS S T ++PV L + D P LE+ VE+ K+ E R + VE+
Sbjct: 202 GSLSTTRSKPVHKLGMPAFPWPQADFPALKYPLEEHVEENAKE-EQRCIDQVEQ 254
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 102 GYTSASRDRPMPTQHLEDSV 121
GYTSAS DRP+ E SV
Sbjct: 480 GYTSASPDRPLSQTITESSV 499
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 9.2
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 214 EALNTYQLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTPTAEKDL 269
EALN +Q L + + + +G YF++ ++ K+ ++++ D +P+ KD+
Sbjct: 347 EALNCFQSLPIEQ--QNTPFVLAKLGITYFELVDYEKSEEVFQKLRDLSPSRVKDM 400
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,126
Number of Sequences: 5004
Number of extensions: 56529
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 13
length of query: 349
length of database: 2,362,478
effective HSP length: 73
effective length of query: 276
effective length of database: 1,997,186
effective search space: 551223336
effective search space used: 551223336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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