GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000907-TA|BGIBMGA000907-PA|IPR013026|Tetratricopeptide
region, IPR013105|Tetratricopeptide TPR_2
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    30   0.43 
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    30   0.43 
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.74 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    28   1.7  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    28   1.7  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    28   2.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   3.0  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    27   3.0  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    27   4.0  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    26   9.2  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   9.2  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 107 SRDRPMPTQHLEDSVEDRVKQMEARIMALVEESCLLSAR 145
           S +  + +  +ED +E R+ ++EAR+  LVE S LL AR
Sbjct: 62  SYESVLESSTIEDIIE-RITRLEARVRQLVESSQLLEAR 99


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 202 LADQYALNEMYTEALNTYQLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMAL 259
           L   Y + +M+  AL  +Q  T   L P+  R+   +GN Y K+    +A+K Y+ AL
Sbjct: 412 LGQTYEVLDMHFYALYYFQRATA--LRPYDQRMWQALGNCYEKIDRPQEAIKSYKRAL 467


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 39  PALDTRNLREDETFQETLRTAGIGRKLPSRTGTGMVRLGTVSMRDVGSRSGTSAR 93
           P  D     EDE  + TLRTA  G + P++      +  TV+  +VGS++GT+ R
Sbjct: 271 PNADLIISEEDELTEMTLRTAN-GSE-PTKKSNRSEQSKTVANTNVGSKNGTTPR 323


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 209 NEMYTEALNTYQLLTRNKLFPHANRLKVN-MGNIYFKMGEHPKALKLYRMALD 260
           NE Y++A+ T  LL    L  H N   ++ +   YFK G  PKA+      LD
Sbjct: 477 NEQYSDAVKTLGLL----LDDHENDPSLSELSWCYFKTGNLPKAISTVEKCLD 525


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 205 QYALNEMYTE-ALNTYQLLTRNKL--FPHANRLKVNMGNIYFKMGEHPKA--LKLYRMAL 259
           Q+   E+  + A+  ++LL  + L  F   N   +N+   YF+MG H  A  L++Y+  +
Sbjct: 167 QFVAEEIDNDIAITAFRLLVGDLLVLFKAVNIGVINVLEHYFEMGHHDAAQSLRIYKTFV 226

Query: 260 DQTPTAEKDLSDA 272
           +QT      LS A
Sbjct: 227 NQTEDIINYLSTA 239


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 117 LEDSVEDRVKQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEAST 172
           L  S +     +  + +A  E+  L++  P PDD+  T + H++ +A     E  T
Sbjct: 133 LSTSTDAAKDDLLKKFIASEEKKELINCIPIPDDEKLTNRLHEVSEAFFALDEQHT 188


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 11/82 (13%)

Query: 102 GYTSASRDRPMPTQHLEDSVEDRVKQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLG 161
           G   A +++ +  Q  +   E+R++Q EA  +   +E      R   + +   R++  + 
Sbjct: 70  GSAEAGKEKKLQKQRAQ---EERIRQKEAERLKREKE------RQQREQEKKLREQEKI- 119

Query: 162 QALAKAQEASTMERQLIRMQEQ 183
            A  K +E   +E++ IR+QEQ
Sbjct: 120 -AAKKMKELEKLEKERIRLQEQ 140


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 162 QALAKAQEASTMERQLIRMQEQANLGDTHNLDLTFAVLCNLADQYALNEMYTEALNTYQL 221
           QALAK Q A+T  +Q+    +QA+   T +  +T  V  NL    A   +Y    + Y+L
Sbjct: 212 QALAKGQVATTSPQQIPNQIQQASAATTASSKMT--VDTNLGT--AQPSLYNTPSSDYEL 267

Query: 222 LTRNK 226
             + K
Sbjct: 268 ANQEK 272


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 85  GSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVEDRVKQMEARIMALVEE 138
           GS S T ++PV  L    +     D P     LE+ VE+  K+ E R +  VE+
Sbjct: 202 GSLSTTRSKPVHKLGMPAFPWPQADFPALKYPLEEHVEENAKE-EQRCIDQVEQ 254


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 102 GYTSASRDRPMPTQHLEDSV 121
           GYTSAS DRP+     E SV
Sbjct: 480 GYTSASPDRPLSQTITESSV 499


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 214 EALNTYQLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTPTAEKDL 269
           EALN +Q L   +   +   +   +G  YF++ ++ K+ ++++   D +P+  KD+
Sbjct: 347 EALNCFQSLPIEQ--QNTPFVLAKLGITYFELVDYEKSEEVFQKLRDLSPSRVKDM 400


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,126
Number of Sequences: 5004
Number of extensions: 56529
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 13
length of query: 349
length of database: 2,362,478
effective HSP length: 73
effective length of query: 276
effective length of database: 1,997,186
effective search space: 551223336
effective search space used: 551223336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)