GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000907-TA|BGIBMGA000907-PA|IPR013026|Tetratricopeptide
region, IPR013105|Tetratricopeptide TPR_2
         (349 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   4.1  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   5.4  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    24   5.4  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     23   9.5  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 212 YTEALNTYQLLTR-NKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTP 263
           Y  AL  Y+   R N   P A RL   MG+ + K+    KA   ++ ALD  P
Sbjct: 178 YRGALAFYKKALRTNPNCPAAVRL--GMGHCFLKLSNPDKAKLAFQRALDLEP 228


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 6   YYSASRLGTDAKPRTAIIVDEDDELYSGFNEVAPALD 42
           +YS  ++ TD+    A IV+E + L  G   +   +D
Sbjct: 213 FYSLEKMKTDSTEELARIVNEANRLVRGLERLNEPVD 249


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 2/123 (1%)

Query: 69  TGT-GMVRLGTVSMRDVGSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVEDRVKQ 127
           TGT  ++ L T +   +   SG      TA R        R+R    Q  +   + + +Q
Sbjct: 143 TGTRSVLELQTAANATLQQSSGQGGNRETA-RKRQQRLRRRERERQQQQQQQQQQQQQQQ 201

Query: 128 MEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEASTMERQLIRMQEQANLG 187
            + +     ++ C    +  P      + +  L   + + + +    +   + Q+Q   G
Sbjct: 202 QQQQQQRQQQQQCQQQRQQQPQQQQLQQPQQQLWTTVVRGRPSQRHRQPQQQQQQQQQQG 261

Query: 188 DTH 190
           + +
Sbjct: 262 ERY 264


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 23.4 bits (48), Expect = 9.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 268 DLSDAEGGKAAFHAMLDVEPPTYHQDIP 295
           D  DAE G A   A+LD  P    + +P
Sbjct: 641 DNDDAEAGAAVPEAVLDAIPEAMPEAVP 668


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,826
Number of Sequences: 2123
Number of extensions: 13445
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 6
length of query: 349
length of database: 516,269
effective HSP length: 65
effective length of query: 284
effective length of database: 378,274
effective search space: 107429816
effective search space used: 107429816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)