Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000907-TA|BGIBMGA000907-PA|IPR013026|Tetratricopeptide
region, IPR013105|Tetratricopeptide TPR_2
(349 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 174 7e-44
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 174 7e-44
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical... 34 0.17
Z29644-1|CAA82752.1| 540|Caenorhabditis elegans kinesin light c... 33 0.30
U55369-14|AAN84862.1| 540|Caenorhabditis elegans Kinesin light ... 33 0.30
U55369-13|AAN84863.1| 501|Caenorhabditis elegans Kinesin light ... 33 0.30
U55369-12|AAK52182.1| 522|Caenorhabditis elegans Kinesin light ... 33 0.30
U55369-11|AAT68902.1| 531|Caenorhabditis elegans Kinesin light ... 33 0.30
Z81571-7|CAB04620.1| 272|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z29645-1|CAA82753.1| 522|Caenorhabditis elegans kinesin light c... 32 0.53
AF016422-4|AAG24172.1| 320|Caenorhabditis elegans Hypothetical ... 32 0.70
U00064-2|AAD31934.2| 329|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical pr... 30 2.8
Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical pr... 30 2.8
U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr... 30 2.8
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr... 30 2.8
AL117202-30|CAD56611.1| 879|Caenorhabditis elegans Hypothetical... 30 2.8
AL117202-29|CAD56610.1| 795|Caenorhabditis elegans Hypothetical... 30 2.8
U58763-2|AAK68876.1| 673|Caenorhabditis elegans Metaphase-to-an... 29 4.9
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 29 6.5
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 6.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 6.5
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 6.5
AC006695-2|AAM48553.1| 724|Caenorhabditis elegans Temporarily a... 29 6.5
AC006695-1|AAU45229.1| 703|Caenorhabditis elegans Temporarily a... 29 6.5
U80446-6|AAB37805.2| 783|Caenorhabditis elegans Hypothetical pr... 28 8.6
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 28 8.6
U58748-1|ABN43078.1| 173|Caenorhabditis elegans Hypothetical pr... 28 8.6
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 174 bits (424), Expect = 7e-44
Identities = 100/263 (38%), Positives = 153/263 (58%), Gaps = 31/263 (11%)
Query: 25 DEDDELYSGFNEVAPALDTRNLREDETFQETLRTAGIGRKLPSRT--------------G 70
++DD+ Y GF+ A D +N+ ++ FQ+ + + GR+ + G
Sbjct: 8 EDDDDFYGGFDSYDKAYDIQNITQNPQFQQAVARSSHGRRPTASQMGFRDASSSYGKPPG 67
Query: 71 TGMVRLGTVSMRDVGSRSGTSARPVTALRAAGYTSASR-----DRPMPTQHLEDSVEDRV 125
T M + R + + ARP+TA+R AGYTS + +RP+ T++ ++ E++
Sbjct: 68 TMMGNQSRMGGRTAMANNNEPARPMTAVRGAGYTSFANKVQAAERPLSTENSGENGEEKC 127
Query: 126 KQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEASTMERQLIRMQEQAN 185
+QME ++M ++ ES L S ++ +AL KA+EA ER +++ +EQ
Sbjct: 128 RQMENKVMEMLRESMLAS------------EKKKFKEALDKAKEAGRRERAVVKHREQQG 175
Query: 186 LGDTHNLDLTFAVLCNLADQYALNEMYTEALNTYQLLTRNKLFPHANRLKVNMGNIYFKM 245
L + NLDLTF VL NLA QY N+M EALNTY+++ RNK+FP++ RLKVN+GNI+F+
Sbjct: 176 LVEMMNLDLTFTVLFNLAQQYEANDMTNEALNTYEIIVRNKMFPNSGRLKVNIGNIHFRK 235
Query: 246 GEHPKALKLYRMALDQTPTAEKD 268
E KALK YRMALDQ P+ +KD
Sbjct: 236 REFTKALKYYRMALDQVPSIQKD 258
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 174 bits (424), Expect = 7e-44
Identities = 100/263 (38%), Positives = 153/263 (58%), Gaps = 31/263 (11%)
Query: 25 DEDDELYSGFNEVAPALDTRNLREDETFQETLRTAGIGRKLPSRT--------------G 70
++DD+ Y GF+ A D +N+ ++ FQ+ + + GR+ + G
Sbjct: 8 EDDDDFYGGFDSYDKAYDIQNITQNPQFQQAVARSSHGRRPTASQMGFRDASSSYGKPPG 67
Query: 71 TGMVRLGTVSMRDVGSRSGTSARPVTALRAAGYTSASR-----DRPMPTQHLEDSVEDRV 125
T M + R + + ARP+TA+R AGYTS + +RP+ T++ ++ E++
Sbjct: 68 TMMGNQSRMGGRTAMANNNEPARPMTAVRGAGYTSFANKVQAAERPLSTENSGENGEEKC 127
Query: 126 KQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEASTMERQLIRMQEQAN 185
+QME ++M ++ ES L S ++ +AL KA+EA ER +++ +EQ
Sbjct: 128 RQMENKVMEMLRESMLAS------------EKKKFKEALDKAKEAGRRERAVVKHREQQG 175
Query: 186 LGDTHNLDLTFAVLCNLADQYALNEMYTEALNTYQLLTRNKLFPHANRLKVNMGNIYFKM 245
L + NLDLTF VL NLA QY N+M EALNTY+++ RNK+FP++ RLKVN+GNI+F+
Sbjct: 176 LVEMMNLDLTFTVLFNLAQQYEANDMTNEALNTYEIIVRNKMFPNSGRLKVNIGNIHFRK 235
Query: 246 GEHPKALKLYRMALDQTPTAEKD 268
E KALK YRMALDQ P+ +KD
Sbjct: 236 REFTKALKYYRMALDQVPSIQKD 258
>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
protein Y47G6A.17 protein.
Length = 1736
Score = 33.9 bits (74), Expect = 0.17
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 119 DSVEDRVKQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEASTMERQL 177
+ EDRVK ++ + A+VEES + R +D T KE +L Q + +A+T+ R L
Sbjct: 344 ERAEDRVKGLQDELNAVVEESNKM--RTMIREDRTGEKEQELEQLKKELVDATTLARNL 400
>Z29644-1|CAA82752.1| 540|Caenorhabditis elegans kinesin light
chain (isoform 1) protein.
Length = 540
Score = 33.1 bits (72), Expect = 0.30
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 166 KAQEASTMERQLIRMQEQANLGDTHNLDLT-----FAVLCNLADQYA-LNEMYTEALNTY 219
K ++A + ++ + ++E+ LGD H D+ A+LC +Y + + Y AL Y
Sbjct: 305 KFKDAEPLCKRALEIREKV-LGDDHP-DVAKQLNNLALLCQNQGKYEEVEKYYKRALEIY 362
Query: 220 QLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTPTAEKDLSDAEG 274
+ P+ + K N+ + Y K G++ +A +LY+ L T E++ G
Sbjct: 363 ESKLGPD-DPNVAKTKNNLSSAYLKQGKYKEAEELYKQIL--TRAHEREFGQISG 414
>U55369-14|AAN84862.1| 540|Caenorhabditis elegans Kinesin light
chain protein 2,isoform b protein.
Length = 540
Score = 33.1 bits (72), Expect = 0.30
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 166 KAQEASTMERQLIRMQEQANLGDTHNLDLT-----FAVLCNLADQYA-LNEMYTEALNTY 219
K ++A + ++ + ++E+ LGD H D+ A+LC +Y + + Y AL Y
Sbjct: 305 KFKDAEPLCKRALEIREKV-LGDDHP-DVAKQLNNLALLCQNQGKYEEVEKYYKRALEIY 362
Query: 220 QLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTPTAEKDLSDAEG 274
+ P+ + K N+ + Y K G++ +A +LY+ L T E++ G
Sbjct: 363 ESKLGPD-DPNVAKTKNNLSSAYLKQGKYKEAEELYKQIL--TRAHEREFGQISG 414
>U55369-13|AAN84863.1| 501|Caenorhabditis elegans Kinesin light
chain protein 2,isoform c protein.
Length = 501
Score = 33.1 bits (72), Expect = 0.30
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 166 KAQEASTMERQLIRMQEQANLGDTHNLDLT-----FAVLCNLADQYA-LNEMYTEALNTY 219
K ++A + ++ + ++E+ LGD H D+ A+LC +Y + + Y AL Y
Sbjct: 305 KFKDAEPLCKRALEIREKV-LGDDHP-DVAKQLNNLALLCQNQGKYEEVEKYYKRALEIY 362
Query: 220 QLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTPTAEKDLSDAEG 274
+ P+ + K N+ + Y K G++ +A +LY+ L T E++ G
Sbjct: 363 ESKLGPD-DPNVAKTKNNLSSAYLKQGKYKEAEELYKQIL--TRAHEREFGQISG 414
>U55369-12|AAK52182.1| 522|Caenorhabditis elegans Kinesin light
chain protein 2,isoform a protein.
Length = 522
Score = 33.1 bits (72), Expect = 0.30
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 166 KAQEASTMERQLIRMQEQANLGDTHNLDLT-----FAVLCNLADQYA-LNEMYTEALNTY 219
K ++A + ++ + ++E+ LGD H D+ A+LC +Y + + Y AL Y
Sbjct: 326 KFKDAEPLCKRALEIREKV-LGDDHP-DVAKQLNNLALLCQNQGKYEEVEKYYKRALEIY 383
Query: 220 QLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTPTAEKDLSDAEG 274
+ P+ + K N+ + Y K G++ +A +LY+ L T E++ G
Sbjct: 384 ESKLGPD-DPNVAKTKNNLSSAYLKQGKYKEAEELYKQIL--TRAHEREFGQISG 435
>U55369-11|AAT68902.1| 531|Caenorhabditis elegans Kinesin light
chain protein 2,isoform d protein.
Length = 531
Score = 33.1 bits (72), Expect = 0.30
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 166 KAQEASTMERQLIRMQEQANLGDTHNLDLT-----FAVLCNLADQYA-LNEMYTEALNTY 219
K ++A + ++ + ++E+ LGD H D+ A+LC +Y + + Y AL Y
Sbjct: 305 KFKDAEPLCKRALEIREKV-LGDDHP-DVAKQLNNLALLCQNQGKYEEVEKYYKRALEIY 362
Query: 220 QLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTPTAEKDLSDAEG 274
+ P+ + K N+ + Y K G++ +A +LY+ L T E++ G
Sbjct: 363 ESKLGPD-DPNVAKTKNNLSSAYLKQGKYKEAEELYKQIL--TRAHEREFGQISG 414
>Z81571-7|CAB04620.1| 272|Caenorhabditis elegans Hypothetical
protein M01G12.9 protein.
Length = 272
Score = 32.3 bits (70), Expect = 0.53
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 235 KVNMGN-IYFKMGEHPKAL-KLYRMALDQTPTAEKDLSDAEGGKAAFHAML 283
K+N + + K+GE PK L K Y L+ TP+ + D +GG+ +ML
Sbjct: 15 KINKDSKMEIKIGELPKVLNKTYLGKLNATPSMNNPVKDTQGGEKQMESML 65
>Z29645-1|CAA82753.1| 522|Caenorhabditis elegans kinesin light
chain (isoform 2) protein.
Length = 522
Score = 32.3 bits (70), Expect = 0.53
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 166 KAQEASTMERQLIRMQEQANLGDTHNLDLT-----FAVLCNLADQYA-LNEMYTEALNTY 219
K ++A + ++ + ++E+ LGD H D+ A+LC +Y + + Y AL Y
Sbjct: 326 KFKDAEPLCKRALEIREKV-LGDDHP-DVAKQLNNLALLCQNQGKYEEVEKYYKRALEIY 383
Query: 220 QLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTPTAEKDLSDAEG 274
+ P+ K N+ + Y K G++ +A +LY+ L T E++ G
Sbjct: 384 ESKLGPD-DPNVANTKNNLSSAYLKQGKYKEAEELYKQIL--TRAHEREFGQISG 435
>AF016422-4|AAG24172.1| 320|Caenorhabditis elegans Hypothetical
protein R09E12.3 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.70
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 229 PHANRLKVNMGNIYFKMGEHPKALKLYRMALDQTP 263
P + + N GN YFK G++P A++ Y A+ + P
Sbjct: 137 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP 171
>U00064-2|AAD31934.2| 329|Caenorhabditis elegans Hypothetical
protein ZC155.7 protein.
Length = 329
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 116 HLEDSVEDRVKQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEASTMER 175
H D VE V++++ R+ L E +RP+ D++ ++E + Q + + T +
Sbjct: 80 HTADQVEFEVERVQRRLDELGEAQRKHISRPNFGDEAFEKEEKQMEQTTEQITQMLTHCQ 139
Query: 176 QLIRM 180
+LIRM
Sbjct: 140 RLIRM 144
>Z81134-7|CAD56602.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 149 DDDSTTRKEHDLGQALAKAQ---EASTMERQLIRMQEQANLGD 188
DD+ TR+E D +A+AKA+ EA + R L ++Q +L D
Sbjct: 711 DDEDVTREELDWKKAMAKAELVKEAESQGRMLPGSEDQQDLKD 753
>Z81134-6|CAB03450.2| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 149 DDDSTTRKEHDLGQALAKAQ---EASTMERQLIRMQEQANLGD 188
DD+ TR+E D +A+AKA+ EA + R L ++Q +L D
Sbjct: 711 DDEDVTREELDWKKAMAKAELVKEAESQGRMLPGSEDQQDLKD 753
>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical protein
T23F2.2b protein.
Length = 1538
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 111 PMPTQHLEDSVEDRVKQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEA 170
P P L D + +E + + E P + +T +D+ A+ E
Sbjct: 1056 PQPFSQLADVLNLVRSDLEQVLTEIEEPEAAKQEEPQMSLEKSTNILNDVLNEWAE-DER 1114
Query: 171 STMERQLIRMQEQANLGDTHNLDLT 195
T+ERQL R QE+ +L N+ L+
Sbjct: 1115 KTLERQLKRSQEERSLLKNKNVQLS 1139
>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical protein
T23F2.2a protein.
Length = 1534
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 111 PMPTQHLEDSVEDRVKQMEARIMALVEESCLLSARPDPDDDSTTRKEHDLGQALAKAQEA 170
P P L D + +E + + E P + +T +D+ A+ E
Sbjct: 1056 PQPFSQLADVLNLVRSDLEQVLTEIEEPEAAKQEEPQMSLEKSTNILNDVLNEWAE-DER 1114
Query: 171 STMERQLIRMQEQANLGDTHNLDLT 195
T+ERQL R QE+ +L N+ L+
Sbjct: 1115 KTLERQLKRSQEERSLLKNKNVQLS 1139
>AL117202-30|CAD56611.1| 879|Caenorhabditis elegans Hypothetical
protein T28D6.5b protein.
Length = 879
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 149 DDDSTTRKEHDLGQALAKAQ---EASTMERQLIRMQEQANLGD 188
DD+ TR+E D +A+AKA+ EA + R L ++Q +L D
Sbjct: 711 DDEDVTREELDWKKAMAKAELVKEAESQGRMLPGSEDQQDLKD 753
>AL117202-29|CAD56610.1| 795|Caenorhabditis elegans Hypothetical
protein T28D6.5a protein.
Length = 795
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 149 DDDSTTRKEHDLGQALAKAQ---EASTMERQLIRMQEQANLGD 188
DD+ TR+E D +A+AKA+ EA + R L ++Q +L D
Sbjct: 711 DDEDVTREELDWKKAMAKAELVKEAESQGRMLPGSEDQQDLKD 753
>U58763-2|AAK68876.1| 673|Caenorhabditis elegans
Metaphase-to-anaphase transitiondefect protein 3
protein.
Length = 673
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 202 LADQYALNEMYTEALNTYQLLTRNKLFPHANRLKVNMGNIYFKMGEHPKALKLY 255
L Y + +M AL YQ + K PH +RL V +G+IY K+ A K +
Sbjct: 474 LGQMYDIMKMPAYALFYYQEAQKCK--PHDSRLLVALGDIYSKLNRIEDAEKCF 525
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 28.7 bits (61), Expect = 6.5
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 192 LDLTFAVLCNLADQYALNEMYTEALNT--YQLLTRNKLFPHANRLKVNMGNIYFKMGEHP 249
L++ L + Q N+ + L T L+ K +P R N+ +IY +G H
Sbjct: 416 LEMCCVALHSAQPQLNANQFMIKYLETPVSLLIEHAKRYPSILRCAFNIADIYSDLGLHK 475
Query: 250 K-ALKL---------YRMALDQTPTAEKDLSDAEGGKAAFHAML 283
+ AL L + +A+ QT AE+ G KA+FH +L
Sbjct: 476 EAALNLAKVSSIEGDHLVAVAQTLAAEQFEKAGMGRKASFHRVL 519
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 78 TVSMRDVGSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVE 122
T SMR +G+ +G ++R + YT S P +HLE +E
Sbjct: 315 TTSMRALGN-NGRNSRQAVNMFELNYTQRSSSVPRGVRHLESHIE 358
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 78 TVSMRDVGSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVE 122
T SMR +G+ +G ++R + YT S P +HLE +E
Sbjct: 315 TTSMRALGN-NGRNSRQAVNMFELNYTQRSSSVPRGVRHLESHIE 358
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 78 TVSMRDVGSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVE 122
T SMR +G+ +G ++R + YT S P +HLE +E
Sbjct: 315 TTSMRALGN-NGRNSRQAVNMFELNYTQRSSSVPRGVRHLESHIE 358
>AC006695-2|AAM48553.1| 724|Caenorhabditis elegans Temporarily
assigned gene nameprotein 58, isoform a protein.
Length = 724
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 78 TVSMRDVGSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVE 122
T SMR +G+ +G ++R + YT S P +HLE +E
Sbjct: 336 TTSMRALGN-NGRNSRQAVNMFELNYTQRSSSVPRGVRHLESHIE 379
>AC006695-1|AAU45229.1| 703|Caenorhabditis elegans Temporarily
assigned gene nameprotein 58, isoform b protein.
Length = 703
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 78 TVSMRDVGSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVE 122
T SMR +G+ +G ++R + YT S P +HLE +E
Sbjct: 315 TTSMRALGN-NGRNSRQAVNMFELNYTQRSSSVPRGVRHLESHIE 358
>U80446-6|AAB37805.2| 783|Caenorhabditis elegans Hypothetical
protein F56A3.1 protein.
Length = 783
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 268 DLSDAEGGKAAFHAMLDVEPPTYHQDIPIDDEKDTYECVVRDV 310
D S + K F + D+E P ++ IPI++ +T C +D+
Sbjct: 675 DFSRFQRRKRVFWVLEDLEHPNENKSIPIEEMDETQLCWNQDI 717
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 28.3 bits (60), Expect = 8.6
Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 2/151 (1%)
Query: 8 SASRLGTDAKPRTAIIVDEDDELYSGFNEVAPALDTRNLREDETFQETLRTAGIGRKLPS 67
S S G+D+ T ++ + DE+ + E + T +ET T K S
Sbjct: 776 STSTTGSDSSETTTVVAENIDEVTTTEKEKVVQTTPITTEKSTTQEETTTTTTTTEKTTS 835
Query: 68 RTGTGMVRLGTVSMRDVGSRSGTSARPVTALRAAGYTSASRDRPMPTQHLEDSVEDRVKQ 127
+T T + + + ++ T ++ T S T ++ E +
Sbjct: 836 KTTTEKPTTSESATTETTTSEPSTTESTTVDTSSATTEESSTAAETTTTSAETSETTTSE 895
Query: 128 MEARIMALVEESCLL--SARPDPDDDSTTRK 156
A I E+ L S++ +++S+ K
Sbjct: 896 SAAFITGESPENTALQSSSQKSEENESSAEK 926
>U58748-1|ABN43078.1| 173|Caenorhabditis elegans Hypothetical
protein ZK180.7 protein.
Length = 173
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 1 MLSSRYYSASRLGTDAKPRTAIIVDEDDELYSGFNEVAPALD 42
M S YY+ +R GT + V E LY G +E P L+
Sbjct: 47 MCYSEYYAVNRSGTIRQYYDRFCVHESHCLYRGIDESCPTLN 88
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.130 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,900,557
Number of Sequences: 27539
Number of extensions: 319215
Number of successful extensions: 723
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 36
length of query: 349
length of database: 12,573,161
effective HSP length: 82
effective length of query: 267
effective length of database: 10,314,963
effective search space: 2754095121
effective search space used: 2754095121
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)
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