GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000907-TA|BGIBMGA000907-PA|IPR013026|Tetratricopeptide
region, IPR013105|Tetratricopeptide TPR_2
         (349 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    25   1.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.9  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 187 GDTHNLDLTFAVLCNLADQYA---------LNEMYTEALNTYQLLTRNKLFPHANRL 234
           G  HN D TF V CN  D            L ++Y   ++    + +  LF H +RL
Sbjct: 208 GIYHNDDKTFLVWCNEEDHLRIISMQMGGDLGQVYRRLVHAVNEIEKRLLFSHNDRL 264


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 42  DTRNLREDETFQETLRTAG--IGRKLPSRTGT 71
           DTR L+++   Q   RTAG    R+ PSR  T
Sbjct: 327 DTRPLKKEPITQSNKRTAGNLATREHPSRNFT 358


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,487
Number of Sequences: 429
Number of extensions: 3303
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 349
length of database: 140,377
effective HSP length: 58
effective length of query: 291
effective length of database: 115,495
effective search space: 33609045
effective search space used: 33609045
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)