GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000906-TA|BGIBMGA000906-PA|undefined
         (104 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   3.4  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    20   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   5.9  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    20   5.9  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 48  RSLPMNMPKFPNDRAAQEQDYADDE 72
           R  P   P+ P      EQ+Y  DE
Sbjct: 134 REKPYTPPRLPTVYGKPEQNYEVDE 158


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 59  NDRAAQEQDYADDEEPH 75
           +DR   E+D  DD + H
Sbjct: 168 DDREKDEEDKRDDTDMH 184


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)

Query: 38  PRGGGVPEIARSLPMNMPKFPNDRAAQEQD 67
           P G  +    RS P    K P    AQE D
Sbjct: 832 PPGVPLNSTPRSTPDKREKSPTSDKAQEAD 861


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 46  IARSLPMNMPKFPNDR 61
           I  S PMN+   P DR
Sbjct: 163 ITASCPMNLQYLPMDR 178


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.132    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,758
Number of Sequences: 317
Number of extensions: 830
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 104
length of database: 114,650
effective HSP length: 49
effective length of query: 55
effective length of database: 99,117
effective search space:  5451435
effective search space used:  5451435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)